Variant report

Variant	rs12445743
Chromosome Location	chr16:72912833-72912834
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:72910249..72913180-chr16:72960243..72962948,2	MCF-7	breast:
2	chr16:72906922..72909977-chr16:72911747..72914412,3	MCF-7	breast:
3	chr16:72901309..72904855-chr16:72910459..72914391,3	MCF-7	breast:
4	chr16:72910303..72916388-chr16:73088434..73093431,5	MCF-7	breast:
5	chr16:72909950..72913062-chr16:72961183..72965659,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000140836	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12445722	0.86[CHB][hapmap];0.92[YRI][hapmap];0.85[ASN][1000 genomes]
rs16971335	0.86[CHB][hapmap];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16971338	1.00[CHB][hapmap];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4461079	0.86[CHB][hapmap];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7190473	0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7193479	0.83[ASN][1000 genomes]
rs7197411	0.86[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs7201079	1.00[CHB][hapmap]
rs7204991	0.82[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs8050587	0.86[CHB][hapmap]
rs9888808	1.00[CHB][hapmap]
rs9889054	1.00[CHB][hapmap]
rs9936586	1.00[CHB][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv572959	chr16:72890216-72923327	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:72883400-72918800	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr16:72895200-72918000	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr16:72906600-72913000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr16:72907800-72916400	Weak transcription	Fetal Brain Female	brain
5	chr16:72908400-72913000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr16:72908400-72913200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr16:72908400-72914400	Enhancers	Fetal Intestine Large	intestine
8	chr16:72908800-72913000	Enhancers	NHDF-Ad	bronchial
9	chr16:72908800-72913200	Enhancers	Left Ventricle	heart
10	chr16:72908800-72913200	Enhancers	NHLF	lung
11	chr16:72909000-72913000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr16:72909000-72913000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr16:72909000-72913000	Enhancers	Fetal Muscle Leg	muscle
14	chr16:72909000-72913000	Enhancers	Skeletal Muscle Female	skeletal muscle
15	chr16:72909000-72913400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr16:72909000-72914400	Enhancers	Placenta	Placenta
17	chr16:72909200-72913000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr16:72909400-72914000	Enhancers	Fetal Muscle Trunk	muscle
19	chr16:72909400-72915600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
20	chr16:72909400-72918200	Weak transcription	Brain Substantia Nigra	brain
21	chr16:72909600-72913000	Enhancers	Liver	Liver
22	chr16:72909600-72918400	Weak transcription	Brain Anterior Caudate	brain
23	chr16:72910000-72916200	Weak transcription	Rectal Smooth Muscle	rectum
24	chr16:72910200-72913000	Enhancers	Right Atrium	heart
25	chr16:72910200-72916400	Weak transcription	Brain Hippocampus Middle	brain
26	chr16:72910400-72913200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr16:72910400-72920400	Weak transcription	Fetal Kidney	kidney
28	chr16:72910400-72925200	Weak transcription	Primary B cells from cord blood	blood
29	chr16:72910600-72915400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr16:72910800-72913000	Genic enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr16:72910800-72913000	Enhancers	Duodenum Mucosa	Duodenum
32	chr16:72910800-72913000	Enhancers	Placenta Amnion	Placenta Amnion
33	chr16:72910800-72913200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr16:72910800-72916400	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr16:72910800-72923600	Weak transcription	GM12878-XiMat	blood
36	chr16:72911000-72913000	Enhancers	Esophagus	oesophagus
37	chr16:72911000-72913400	Enhancers	Right Ventricle	heart
38	chr16:72911200-72918200	Weak transcription	Colon Smooth Muscle	Colon
39	chr16:72911200-72918200	Weak transcription	Monocytes-CD14+_RO01746	blood
40	chr16:72911400-72913000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr16:72911400-72913000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr16:72911400-72913000	Enhancers	Fetal Lung	lung
43	chr16:72911400-72913000	Flanking Active TSS	HepG2	liver
44	chr16:72911400-72913000	Enhancers	HUVEC	blood vessel
45	chr16:72911400-72913000	Enhancers	NH-A	brain
46	chr16:72911400-72914400	Enhancers	Spleen	Spleen
47	chr16:72911600-72913000	Enhancers	Lung	lung
48	chr16:72911600-72913200	Enhancers	Cortex derived primary cultured neurospheres	brain
49	chr16:72911600-72918400	Weak transcription	Duodenum Smooth Muscle	Duodenum
50	chr16:72911800-72913000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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