Variant report

Variant	rs12445722
Chromosome Location	chr16:72891898-72891899
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:72881425..72884440-chr16:72889651..72893703,3	MCF-7	breast:
2	chr16:72887911..72890555-chr16:72890770..72892918,2	MCF-7	breast:
3	chr16:72889542..72892358-chr16:73091251..73093063,3	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12445743	0.86[CHB][hapmap];0.92[YRI][hapmap];0.85[ASN][1000 genomes]
rs16971335	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16971338	0.88[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4461079	1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs60056526	0.93[ASN][1000 genomes]
rs7184235	1.00[JPT][hapmap]
rs7190473	1.00[CHB][hapmap];0.93[CHD][hapmap];0.96[ASN][1000 genomes]
rs7193479	0.98[ASN][1000 genomes]
rs7197411	1.00[CHB][hapmap];0.96[ASN][1000 genomes]
rs7201079	0.88[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs7204991	0.82[CHB][hapmap];0.91[YRI][hapmap];0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs740177	0.87[GIH][hapmap]
rs8050587	1.00[JPT][hapmap]
rs9888808	0.88[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs9889054	0.88[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs9936586	0.86[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv572959	chr16:72890216-72923327	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:72867600-72892400	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr16:72883200-72899200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr16:72883200-72909200	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr16:72883400-72892200	Weak transcription	Brain Angular Gyrus	brain
5	chr16:72883400-72898400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr16:72883400-72898600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr16:72883400-72908400	Weak transcription	Fetal Intestine Large	intestine
8	chr16:72883400-72918800	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr16:72883600-72892200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr16:72883600-72892400	Weak transcription	Brain Cingulate Gyrus	brain
11	chr16:72883600-72893200	Weak transcription	Fetal Intestine Small	intestine
12	chr16:72883600-72912200	Weak transcription	Ovary	ovary
13	chr16:72883800-72908800	Weak transcription	Hela-S3	cervix
14	chr16:72884200-72892000	Weak transcription	Colon Smooth Muscle	Colon
15	chr16:72884200-72899200	Weak transcription	Liver	Liver
16	chr16:72884200-72902200	Weak transcription	Right Ventricle	heart
17	chr16:72884200-72911600	Weak transcription	Gastric	stomach
18	chr16:72884400-72892800	Weak transcription	Fetal Heart	heart
19	chr16:72885200-72892400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr16:72885200-72892800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr16:72885200-72909000	Weak transcription	Lung	lung
22	chr16:72885400-72892000	Weak transcription	HSMMtube	muscle
23	chr16:72885400-72892400	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr16:72885400-72892400	Weak transcription	HSMM	muscle
25	chr16:72885400-72898200	Weak transcription	A549	lung
26	chr16:72887200-72892000	Weak transcription	NH-A	brain
27	chr16:72888200-72892200	Weak transcription	Fetal Kidney	kidney
28	chr16:72888200-72893400	Weak transcription	HUES6 Cell Line	embryonic stem cell
29	chr16:72888200-72893600	Weak transcription	HUES64 Cell Line	embryonic stem cell
30	chr16:72888200-72894800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr16:72888400-72892200	Weak transcription	Adipose Nuclei	Adipose
32	chr16:72888400-72892400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr16:72888400-72892400	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr16:72888800-72892000	Weak transcription	Placenta	Placenta
35	chr16:72889200-72902400	Weak transcription	Spleen	Spleen
36	chr16:72889200-72908800	Weak transcription	Monocytes-CD14+_RO01746	blood
37	chr16:72890400-72892200	Weak transcription	Brain Germinal Matrix	brain
38	chr16:72890400-72899000	Weak transcription	Aorta	Aorta
39	chr16:72890600-72892600	Enhancers	Osteobl	bone
40	chr16:72890800-72892400	Enhancers	Brain Substantia Nigra	brain
41	chr16:72890800-72893400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
42	chr16:72891000-72893000	Weak transcription	HepG2	liver
43	chr16:72891000-72894000	Enhancers	Brain Anterior Caudate	brain
44	chr16:72891000-72894200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr16:72891200-72892600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr16:72891400-72892000	Enhancers	Right Atrium	heart
47	chr16:72891400-72893000	Enhancers	Fetal Muscle Trunk	muscle
48	chr16:72891400-72893000	Enhancers	Pancreas	Pancrea
49	chr16:72891400-72908400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr16:72891600-72892000	Enhancers	Fetal Brain Female	brain

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