Variant report

Variant	rs16971508
Chromosome Location	chr17:34132776-34132777
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:33987664..33989380-chr17:34132554..34135013,3	K562	blood:
2	chr17:34130431..34134333-chr17:34135048..34138170,7	MCF-7	breast:
3	chr17:34052693..34055249-chr17:34130383..34133177,2	K562	blood:
4	chr17:34122154..34123699-chr17:34130647..34133569,2	MCF-7	breast:
5	chr17:34101120..34102648-chr17:34132276..34135170,2	MCF-7	breast:
6	chr17:34093672..34094174-chr17:34132776..34133773,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000172660	Chromatin interaction
ENSG00000129270	Chromatin interaction
ENSG00000267578	Chromatin interaction

rs_ID	r²[population]
rs16971528	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34871231	0.91[AFR][1000 genomes]
rs4251700	0.83[AFR][1000 genomes]
rs4251720	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4251734	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4251739	0.90[AFR][1000 genomes]
rs4251740	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4251757	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9901972	0.90[AMR][1000 genomes]

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:34127000-34135400	Weak transcription	Liver	Liver
2	chr17:34127200-34135000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr17:34127600-34135800	Weak transcription	Aorta	Aorta
4	chr17:34127800-34134000	Weak transcription	NHEK	skin
5	chr17:34128800-34135400	Weak transcription	Brain Cingulate Gyrus	brain
6	chr17:34129000-34133800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr17:34129000-34134000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr17:34129000-34134000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr17:34129000-34134000	Weak transcription	HSMM	muscle
10	chr17:34129000-34134200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr17:34129000-34134600	Weak transcription	NH-A	brain
12	chr17:34129000-34134800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr17:34129000-34135000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr17:34129000-34135200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr17:34129000-34135200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr17:34129000-34135400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr17:34129000-34135400	Weak transcription	Spleen	Spleen
18	chr17:34129000-34135800	Weak transcription	Right Atrium	heart
19	chr17:34129200-34133200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr17:34129200-34134000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr17:34129200-34135000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr17:34129200-34135000	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr17:34129200-34135200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr17:34129200-34135200	Weak transcription	Primary T helper cells fromperipheralblood	blood
25	chr17:34129200-34135200	Weak transcription	Colonic Mucosa	Colon
26	chr17:34129200-34135400	Weak transcription	Primary T cells from cord blood	blood
27	chr17:34129200-34135400	Weak transcription	Adipose Nuclei	Adipose
28	chr17:34129200-34135400	Weak transcription	Brain Anterior Caudate	brain
29	chr17:34129200-34135400	Weak transcription	Brain Substantia Nigra	brain
30	chr17:34129200-34135600	Weak transcription	Brain Germinal Matrix	brain
31	chr17:34129200-34135600	Weak transcription	HSMMtube	muscle
32	chr17:34129200-34135800	Weak transcription	Esophagus	oesophagus
33	chr17:34129400-34133600	Weak transcription	HUVEC	blood vessel
34	chr17:34129400-34135400	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr17:34129400-34135400	Weak transcription	Lung	lung
36	chr17:34130000-34134600	Weak transcription	Primary hematopoietic stem cells	blood
37	chr17:34132000-34134200	Weak transcription	Osteobl	bone
38	chr17:34132000-34134400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr17:34132000-34135200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
40	chr17:34132000-34135400	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr17:34132200-34133200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr17:34132200-34133400	Weak transcription	Fetal Thymus	thymus
43	chr17:34132200-34133600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr17:34132200-34133600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr17:34132200-34133800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr17:34132200-34133800	Weak transcription	K562	blood
47	chr17:34132200-34134000	Weak transcription	Dnd41	blood
48	chr17:34132200-34134400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr17:34132200-34134600	Weak transcription	HUES48 Cell Line	embryonic stem cell
50	chr17:34132200-34134800	Weak transcription	Primary T helper cells PMA-I stimulated	--

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