Variant report

Variant	rs4251739
Chromosome Location	chr17:34148083-34148084
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:34147100..34148609-chr17:34151803..34154663,2	K562	blood:

Extended variants
information (count: 51 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10451309	0.85[CHD][hapmap];0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs16971508	0.91[YRI][hapmap];0.90[AFR][1000 genomes]
rs16971528	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs2242596	1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2242597	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2280783	1.00[CHB][hapmap];0.92[JPT][hapmap]
rs2280786	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2280788	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2293789	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2526331	0.89[EUR][1000 genomes]
rs2702958	0.89[EUR][1000 genomes]
rs2735499	0.89[EUR][1000 genomes]
rs28914802	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28914816	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28914817	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28914819	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34871231	0.82[AFR][1000 genomes]
rs3826454	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4251700	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4251704	0.85[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs4251710	0.85[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs4251720	0.91[AFR][1000 genomes]
rs4251734	0.91[AFR][1000 genomes]
rs4251740	0.95[AFR][1000 genomes]
rs4251757	0.91[YRI][hapmap];0.95[AFR][1000 genomes]
rs55680144	0.89[EUR][1000 genomes]
rs55781042	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55792948	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55799023	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55833673	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55846484	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55906604	0.89[EUR][1000 genomes]
rs55915639	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55951822	0.89[EUR][1000 genomes]
rs56029903	1.00[EUR][1000 genomes]
rs56077005	0.89[EUR][1000 genomes]
rs56111312	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56170514	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56181735	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56221144	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56262662	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56305516	1.00[EUR][1000 genomes]
rs56347933	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56382694	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7225405	0.83[ASN][1000 genomes]
rs72483217	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9898152	0.85[LWK][hapmap]
rs9901469	0.84[ASN][1000 genomes]
rs9901972	0.84[LWK][hapmap];1.00[MEX][hapmap]
rs9907320	0.84[ASN][1000 genomes]
rs9914401	0.85[LWK][hapmap]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs4251739	GAS2L2	cis	Muscle Skeletal	GTEx
rs4251739	GAS2L2	cis	Adipose Subcutaneous	GTEx
rs4251739	CCL5	cis	lymphoblastoid	seeQTL
rs4251739	GAS2L2	cis	Heart Left Ventricle	GTEx

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:34137600-34149200	Weak transcription	Gastric	stomach
2	chr17:34137800-34149200	Weak transcription	Esophagus	oesophagus
3	chr17:34137800-34149800	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr17:34137800-34152000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr17:34137800-34154000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr17:34138000-34149600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr17:34138000-34153400	Weak transcription	Right Ventricle	heart
8	chr17:34138000-34164200	Weak transcription	Colonic Mucosa	Colon
9	chr17:34138200-34149400	Weak transcription	HSMMtube	muscle
10	chr17:34138200-34149600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr17:34138200-34151600	Weak transcription	Fetal Heart	heart
12	chr17:34138600-34180800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr17:34138800-34184000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr17:34139200-34184200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr17:34139400-34149400	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr17:34139400-34163800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr17:34139400-34163800	Weak transcription	Spleen	Spleen
18	chr17:34139400-34177600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
19	chr17:34140600-34148400	Weak transcription	Rectal Smooth Muscle	rectum
20	chr17:34140800-34149600	Weak transcription	Fetal Brain Male	brain
21	chr17:34141600-34177400	Strong transcription	HUES64 Cell Line	embryonic stem cell
22	chr17:34141800-34159800	Weak transcription	Aorta	Aorta
23	chr17:34142000-34175800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
24	chr17:34142000-34177600	Strong transcription	HUES48 Cell Line	embryonic stem cell
25	chr17:34142200-34152600	Strong transcription	Primary B cells from cord blood	blood
26	chr17:34142400-34148600	Strong transcription	GM12878-XiMat	blood
27	chr17:34142400-34177600	Strong transcription	Fetal Thymus	thymus
28	chr17:34142400-34178200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr17:34142600-34173200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr17:34142600-34175600	Strong transcription	H1 Cell Line	embryonic stem cell
31	chr17:34142600-34177400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
32	chr17:34142600-34180400	Strong transcription	HUES6 Cell Line	embryonic stem cell
33	chr17:34142800-34149600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
34	chr17:34142800-34153400	Strong transcription	Placenta	Placenta
35	chr17:34142800-34173200	Strong transcription	Osteobl	bone
36	chr17:34142800-34178600	Strong transcription	Monocytes-CD14+_RO01746	blood
37	chr17:34142800-34180800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr17:34142800-34181000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr17:34143000-34152600	Strong transcription	Hela-S3	cervix
40	chr17:34143000-34174800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr17:34143000-34177400	Strong transcription	Primary monocytes fromperipheralblood	blood
42	chr17:34143000-34177400	Strong transcription	Primary B cells from peripheral blood	blood
43	chr17:34143200-34166200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr17:34143400-34173200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr17:34143600-34158800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr17:34143600-34168200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr17:34144000-34175600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chr17:34144000-34180000	Strong transcription	HSMM	muscle
49	chr17:34144200-34149400	Weak transcription	Psoas Muscle	Psoas
50	chr17:34144200-34149600	Weak transcription	Ovary	ovary

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