Variant report

Variant	rs28914802
Chromosome Location	chr17:34205265-34205266
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs2072667	0.83[AMR][1000 genomes]
rs2242596	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2242597	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2280786	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2280788	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2293789	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2526331	0.89[EUR][1000 genomes]
rs2702958	0.89[EUR][1000 genomes]
rs2735499	0.89[EUR][1000 genomes]
rs28914816	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28914817	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28914819	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3826454	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4251700	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4251739	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55680144	0.89[EUR][1000 genomes]
rs55781042	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55792948	0.89[EUR][1000 genomes]
rs55799023	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55833673	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55846484	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55906604	0.89[EUR][1000 genomes]
rs55915639	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55951822	0.89[EUR][1000 genomes]
rs56029903	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56077005	0.89[EUR][1000 genomes]
rs56111312	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56170514	0.89[EUR][1000 genomes]
rs56181735	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56221144	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56262662	0.89[EUR][1000 genomes]
rs56305516	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56347933	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56382694	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61737011	0.83[AMR][1000 genomes]
rs62078115	0.83[AMR][1000 genomes]
rs72483217	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs28914802	GAS2L2	cis	Muscle Skeletal	GTEx
rs28914802	GAS2L2	cis	Heart Left Ventricle	GTEx
rs28914802	GAS2L2	cis	Adipose Subcutaneous	GTEx

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:34185800-34206800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr17:34192200-34218000	Weak transcription	Stomach Smooth Muscle	stomach
3	chr17:34192400-34213200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr17:34194000-34205800	Weak transcription	K562	blood
5	chr17:34198400-34205400	Weak transcription	Pancreas	Pancrea
6	chr17:34198800-34206800	Weak transcription	Primary B cells from peripheral blood	blood
7	chr17:34198800-34206800	Weak transcription	Placenta	Placenta
8	chr17:34199200-34207200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr17:34202400-34206000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr17:34202400-34206200	Transcr. at gene 5' and 3'	Primary Natural Killer cells fromperipheralblood	blood
11	chr17:34202600-34207800	Active TSS	Rectal Mucosa Donor 29	rectum
12	chr17:34202800-34206800	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr17:34203200-34206800	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr17:34203600-34206800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr17:34203800-34205400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
16	chr17:34203800-34205800	Weak transcription	Primary T helper cells fromperipheralblood	blood
17	chr17:34203800-34207000	Weak transcription	Primary T helper cells PMA-I stimulated	--
18	chr17:34203800-34207000	Weak transcription	Adipose Nuclei	Adipose
19	chr17:34203800-34207000	Weak transcription	Spleen	Spleen
20	chr17:34203800-34207800	Active TSS	Primary T helper naive cells from peripheral blood	blood
21	chr17:34204000-34207000	Weak transcription	Fetal Thymus	thymus
22	chr17:34204000-34207000	Weak transcription	HUVEC	blood vessel
23	chr17:34204000-34207200	Active TSS	Primary T cells fromperipheralblood	blood
24	chr17:34204000-34207200	Weak transcription	Right Atrium	heart
25	chr17:34204400-34207600	Active TSS	Primary T killer memory cells from peripheral blood	blood
26	chr17:34204800-34206800	Enhancers	GM12878-XiMat	blood
27	chr17:34204800-34207400	Active TSS	Primary mononuclear cells fromperipheralblood	Blood
28	chr17:34205000-34207600	Active TSS	Duodenum Mucosa	Duodenum
29	chr17:34205200-34205600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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