Variant report

Variant	rs7225405
Chromosome Location	chr17:34140999-34141000
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:3)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:3 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr17:34135622-34141134	MCF10A-Er-Src	breast:	n/a	n/a
2	POLR2A	chr17:34140818-34141027	K562	blood:	n/a	n/a
3	POLR2A	chr17:34139619-34141070	K562	blood:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:34099350..34101578-chr17:34139330..34141819,2	K562	blood:
2	chr17:34137709..34141485-chr17:34149369..34151902,3	MCF-7	breast:
3	chr17:34139263..34141332-chr17:34163653..34165497,2	K562	blood:
4	chr17:34138831..34141279-chr17:34143427..34145542,2	MCF-7	breast:
5	chr17:34140775..34141275-chr7:78979249..78979789,2	NB4	blood:

No data

Variant related genes	Relation type
ENSG00000267347	TF binding region
ENSG00000267347	Chromatin interaction

rs_ID	r²[population]
rs4251739	0.83[ASN][1000 genomes]

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:34137600-34141200	Weak transcription	Aorta	Aorta
2	chr17:34137600-34143400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr17:34137600-34149200	Weak transcription	Gastric	stomach
4	chr17:34137800-34142800	Weak transcription	Fetal Muscle Trunk	muscle
5	chr17:34137800-34142800	Weak transcription	Placenta	Placenta
6	chr17:34137800-34143600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr17:34137800-34143800	Weak transcription	Left Ventricle	heart
8	chr17:34137800-34144800	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr17:34137800-34145000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr17:34137800-34149200	Weak transcription	Esophagus	oesophagus
11	chr17:34137800-34149800	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr17:34137800-34152000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr17:34137800-34154000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr17:34138000-34141600	Enhancers	Primary T killer memory cells from peripheral blood	blood
15	chr17:34138000-34143000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr17:34138000-34143000	Weak transcription	Fetal Muscle Leg	muscle
17	chr17:34138000-34144800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr17:34138000-34144800	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr17:34138000-34145200	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr17:34138000-34146200	Enhancers	Primary T helper naive cells from peripheral blood	blood
21	chr17:34138000-34146800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr17:34138000-34149600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr17:34138000-34153400	Weak transcription	Right Ventricle	heart
24	chr17:34138000-34164200	Weak transcription	Colonic Mucosa	Colon
25	chr17:34138200-34141200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
26	chr17:34138200-34142800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr17:34138200-34143000	Weak transcription	Psoas Muscle	Psoas
28	chr17:34138200-34145800	Weak transcription	NHDF-Ad	bronchial
29	chr17:34138200-34149400	Weak transcription	HSMMtube	muscle
30	chr17:34138200-34149600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr17:34138200-34151600	Weak transcription	Fetal Heart	heart
32	chr17:34138400-34141400	Enhancers	Primary T cells from cord blood	blood
33	chr17:34138400-34142200	Weak transcription	Brain Angular Gyrus	brain
34	chr17:34138400-34142800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
35	chr17:34138400-34143000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr17:34138400-34143200	Weak transcription	NHLF	lung
37	chr17:34138400-34145200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
38	chr17:34138400-34146600	Weak transcription	Skeletal Muscle Female	skeletal muscle
39	chr17:34138600-34180800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr17:34138800-34142200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr17:34138800-34143000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr17:34138800-34144400	Weak transcription	Primary hematopoietic stem cells	blood
43	chr17:34138800-34144600	Weak transcription	Duodenum Mucosa	Duodenum
44	chr17:34138800-34184000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr17:34139000-34142000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
46	chr17:34139000-34142200	Weak transcription	Duodenum Smooth Muscle	Duodenum
47	chr17:34139000-34144200	Weak transcription	Pancreatic Islets	Pancreatic Islet
48	chr17:34139000-34144800	Weak transcription	Rectal Mucosa Donor 29	rectum
49	chr17:34139000-34146200	Weak transcription	NH-A	brain
50	chr17:34139200-34141000	Enhancers	HepG2	liver

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