Variant report

Variant	rs9901469
Chromosome Location	chr17:34116989-34116990
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:34113403..34117361-chr17:34123102..34125354,3	K562	blood:
2	chr17:34115429..34118225-chr17:34133751..34137344,3	K562	blood:

Variant related genes	Relation type
ENSG00000172660	Chromatin interaction
ENSG00000267578	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10451309	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4251700	0.92[ASN][1000 genomes]
rs4251704	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4251710	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4251739	0.84[ASN][1000 genomes]
rs4251744	0.80[EUR][1000 genomes]
rs55792948	0.90[ASN][1000 genomes]
rs55915639	0.81[ASN][1000 genomes]
rs56170514	0.90[ASN][1000 genomes]
rs56262662	0.90[ASN][1000 genomes]
rs56347933	0.89[ASN][1000 genomes]
rs56382694	0.92[ASN][1000 genomes]
rs60040900	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7209512	0.80[EUR][1000 genomes]
rs8073456	0.80[EUR][1000 genomes]
rs9896368	0.91[EUR][1000 genomes]
rs9907320	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9901469	GAS2L2	cis	Heart Left Ventricle	GTEx

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:34106000-34121400	Weak transcription	Primary hematopoietic stem cells	blood
2	chr17:34112200-34119000	Weak transcription	Right Ventricle	heart
3	chr17:34112200-34121800	Weak transcription	Pancreas	Pancrea
4	chr17:34114200-34117600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr17:34114200-34117600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
6	chr17:34115000-34117200	Enhancers	Primary T helper naive cells from peripheral blood	blood
7	chr17:34115200-34117400	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr17:34116000-34117800	Weak transcription	Fetal Intestine Large	intestine
9	chr17:34116000-34119000	Weak transcription	Right Atrium	heart
10	chr17:34116200-34117000	Enhancers	HMEC	breast
11	chr17:34116200-34117600	Weak transcription	Fetal Intestine Small	intestine
12	chr17:34116200-34118000	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr17:34116200-34119000	Weak transcription	Brain Substantia Nigra	brain
14	chr17:34116200-34120200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr17:34116200-34120200	Weak transcription	Esophagus	oesophagus
16	chr17:34116200-34120400	Weak transcription	Lung	lung
17	chr17:34116400-34117000	Enhancers	A549	lung
18	chr17:34116400-34117400	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr17:34116400-34117400	Weak transcription	Stomach Mucosa	stomach
20	chr17:34116400-34117800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr17:34116400-34118200	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr17:34116400-34118400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr17:34116400-34118600	Weak transcription	Rectal Smooth Muscle	rectum
24	chr17:34116400-34118600	Weak transcription	Stomach Smooth Muscle	stomach
25	chr17:34116400-34118600	Weak transcription	HSMMtube	muscle
26	chr17:34116400-34118800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr17:34116400-34119200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
28	chr17:34116400-34120200	Enhancers	Hela-S3	cervix
29	chr17:34116400-34121600	Weak transcription	Gastric	stomach
30	chr17:34116600-34118800	Weak transcription	Adipose Nuclei	Adipose
31	chr17:34116600-34119800	Weak transcription	Primary T helper cells fromperipheralblood	blood
32	chr17:34116800-34117200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr17:34116800-34118800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
34	chr17:34116800-34118800	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr17:34116800-34119000	Enhancers	NHEK	skin
36	chr17:34116800-34119200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr17:34116800-34120200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr17:34116800-34120200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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