Variant report

Variant	rs16971910
Chromosome Location	chr15:41912656-41912657
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs16971909	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28626380	1.00[EUR][1000 genomes]
rs34424865	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34807597	1.00[EUR][1000 genomes]
rs36126315	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61281049	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61736067	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7164947	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7177502	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7178936	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7182680	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8043323	1.00[AMR][1000 genomes]
rs919142	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052902	chr15:41869277-41951572	Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41909000-41913000	Weak transcription	Placenta	Placenta
2	chr15:41909600-41912800	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr15:41910200-41912800	Weak transcription	Brain Hippocampus Middle	brain
4	chr15:41912600-41912800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr15:41912600-41912800	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
6	chr15:41912600-41912800	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
7	chr15:41912600-41912800	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
8	chr15:41912600-41912800	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr15:41912600-41912800	Enhancers	Liver	Liver
10	chr15:41912600-41912800	Enhancers	Brain Angular Gyrus	brain
11	chr15:41912600-41912800	Enhancers	Fetal Brain Male	brain
12	chr15:41912600-41912800	Enhancers	Fetal Kidney	kidney
13	chr15:41912600-41912800	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr15:41912600-41912800	Enhancers	Dnd41	blood
15	chr15:41912600-41912800	Enhancers	HepG2	liver
16	chr15:41912600-41912800	Enhancers	NH-A	brain
17	chr15:41912600-41913400	Flanking Active TSS	Hela-S3	cervix
18	chr15:41912600-41914400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
19	chr15:41912600-41915000	Active TSS	A549	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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