Variant report

Variant	rs7177502
Chromosome Location	chr15:41910441-41910442
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs16971909	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16971910	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28626380	1.00[EUR][1000 genomes]
rs34424865	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34807597	1.00[EUR][1000 genomes]
rs36126315	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61281049	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61736067	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7164947	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7178936	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7182680	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8043323	1.00[AMR][1000 genomes]
rs919142	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052902	chr15:41869277-41951572	Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41909000-41913000	Weak transcription	Placenta	Placenta
2	chr15:41909600-41912800	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr15:41910200-41912800	Weak transcription	Brain Hippocampus Middle	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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