Variant report

Variant	rs16972058
Chromosome Location	chr15:42057370-42057371
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:42057036..42058536-chr15:42061247..42063418,2	MCF-7	breast:
2	chr15:42055979..42058017-chr15:42060516..42063137,2	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10518728	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs16972233	1.00[MEX][hapmap]
rs2303518	0.91[ASW][hapmap]
rs74014621	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049514	chr15:41958482-42081210	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv931223	chr15:41989960-42781757	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
3	nsv1036086	chr15:42004962-42091451	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv1041861	chr15:42016097-42062287	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
5	nsv1054671	chr15:42016097-42098896	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
6	nsv1038894	chr15:42038152-42077452	Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
7	esv2757597	chr15:42047173-42122617	Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
8	esv2760027	chr15:42047173-42122617	Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
9	nsv904113	chr15:42050390-42118971	Genic enhancers Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
10	nsv904114	chr15:42050390-42119900	Strong transcription Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
11	nsv427958	chr15:42051317-42301283	Strong transcription Weak transcription Enhancers Active TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41972400-42065200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr15:42017400-42062600	Strong transcription	Primary T cells fromperipheralblood	blood
3	chr15:42019400-42060600	Strong transcription	Primary T helper cells fromperipheralblood	blood
4	chr15:42025200-42065400	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr15:42035800-42058200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr15:42036000-42058400	Weak transcription	Psoas Muscle	Psoas
7	chr15:42039000-42064400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr15:42039600-42062600	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr15:42040000-42061400	Strong transcription	Primary monocytes fromperipheralblood	blood
10	chr15:42040200-42059800	Strong transcription	Primary T helper cells PMA-I stimulated	--
11	chr15:42040200-42064400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr15:42040600-42063000	Strong transcription	HUES64 Cell Line	embryonic stem cell
13	chr15:42041800-42058200	Weak transcription	Gastric	stomach
14	chr15:42044400-42062600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr15:42045600-42060000	Strong transcription	Primary B cells from cord blood	blood
16	chr15:42045600-42061600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr15:42045600-42062000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr15:42045600-42065200	Weak transcription	Stomach Mucosa	stomach
19	chr15:42045800-42063200	Strong transcription	Placenta	Placenta
20	chr15:42046000-42061400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
21	chr15:42046000-42062600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr15:42046200-42062800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
23	chr15:42046400-42060400	Strong transcription	Duodenum Mucosa	Duodenum
24	chr15:42047600-42058600	Weak transcription	Fetal Brain Male	brain
25	chr15:42050200-42059600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr15:42051000-42062400	Strong transcription	Primary T cells from cord blood	blood
27	chr15:42051000-42062400	Strong transcription	Liver	Liver
28	chr15:42051200-42061200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr15:42051600-42060000	Strong transcription	HUES6 Cell Line	embryonic stem cell
30	chr15:42051600-42061800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr15:42051600-42062400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
32	chr15:42051800-42059200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr15:42051800-42060200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr15:42051800-42060400	Strong transcription	Brain Germinal Matrix	brain
35	chr15:42051800-42061200	Strong transcription	Cortex derived primary cultured neurospheres	brain
36	chr15:42051800-42061800	Strong transcription	Fetal Intestine Large	intestine
37	chr15:42051800-42062400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
38	chr15:42051800-42062400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr15:42052000-42061000	Strong transcription	Rectal Mucosa Donor 29	rectum
40	chr15:42052000-42061200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr15:42052000-42063000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr15:42052200-42059800	Strong transcription	H1 Cell Line	embryonic stem cell
43	chr15:42052200-42059800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr15:42052200-42060000	Strong transcription	Adipose Nuclei	Adipose
45	chr15:42052200-42060000	Strong transcription	Skeletal Muscle Female	skeletal muscle
46	chr15:42052200-42061400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr15:42052200-42062000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr15:42052200-42062400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr15:42052200-42062400	Strong transcription	Fetal Muscle Trunk	muscle
50	chr15:42052200-42062400	Strong transcription	Fetal Muscle Leg	muscle

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