Variant report

Variant	rs16973028
Chromosome Location	chr18:11736647-11736648
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1249628	1.00[CEU][hapmap]
rs16976623	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28468616	0.90[ASN][1000 genomes]
rs2903236	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4547404	1.00[ASN][1000 genomes]
rs56069280	0.83[ASN][1000 genomes]
rs60025683	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61184045	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6505673	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7227421	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7234970	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73944252	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73946312	0.90[ASN][1000 genomes]
rs73946313	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73947607	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8084370	0.93[ASN][1000 genomes]
rs8084625	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8085082	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9303745	1.00[ASN][1000 genomes]
rs9947295	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs9964761	1.00[ASN][1000 genomes]
rs9967279	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3362008	chr18:11647654-11959830	Active TSS Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv1065382	chr18:11723230-11769732	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:11733600-11736800	Weak transcription	A549	lung
2	chr18:11733600-11737600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr18:11736600-11736800	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr18:11736600-11736800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr18:11736600-11737800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
6	chr18:11736600-11738400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr18:11736600-11739600	Enhancers	Fetal Brain Male	brain

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