Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr18:11741300-11741450	GM12870	blood:	n/a	n/a
2	RAD21	chr18:11741439-11741955	HCT-116	colon:	n/a	chr18:11741711-11741730
3	CTCF	chr18:11741400-11741550	AG10803	skin:	n/a	n/a
4	CTCF	chr18:11741320-11741470	HFF-Myc	foreskin:	n/a	n/a
5	CTCF	chr18:11741320-11741470	SAEC	small airway:	n/a	n/a
6	CTCF	chr18:11741349-11742096	A549	lung:	n/a	chr18:11741720-11741728 chr18:11741713-11741731 chr18:11741708-11741729
7	CTCF	chr18:11741427-11741993	MCF-7	breast:	n/a	chr18:11741720-11741728 chr18:11741713-11741731 chr18:11741708-11741729

No.	Distal block	Cell Line	Cell type
1	chr18:11740510..11743051-chr18:11858756..11861303,2	K562	blood:
2	chr18:11707724..11709378-chr18:11741039..11743864,2	K562	blood:
3	chr18:11741098..11743406-chr18:12048989..12050837,2	K562	blood:
4	chr18:11687823..11690505-chr18:11739592..11742363,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs16973028	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16976623	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28468616	0.90[ASN][1000 genomes]
rs2903236	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4547404	1.00[ASN][1000 genomes]
rs56069280	0.83[ASN][1000 genomes]
rs60025683	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61184045	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6505673	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7227421	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7234970	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73946312	0.90[ASN][1000 genomes]
rs73946313	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73947607	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8084370	0.93[ASN][1000 genomes]
rs8084625	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8085082	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9303745	1.00[ASN][1000 genomes]
rs9947295	0.90[ASN][1000 genomes]
rs9964761	1.00[ASN][1000 genomes]
rs9967279	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3362008	chr18:11647654-11959830	Active TSS Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv1065382	chr18:11723230-11769732	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:11738200-11741600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr18:11738400-11742400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr18:11740000-11744800	Enhancers	Fetal Brain Male	brain
4	chr18:11740600-11742600	Weak transcription	Fetal Brain Female	brain
5	chr18:11740800-11742600	Weak transcription	Brain Anterior Caudate	brain
6	chr18:11740800-11742600	Weak transcription	Right Ventricle	heart

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