Variant report

Variant	rs16976124
Chromosome Location	chr18:40026568-40026569
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs168300	0.80[AFR][1000 genomes]
rs16976125	1.00[EUR][1000 genomes]
rs16976127	1.00[EUR][1000 genomes]
rs16976130	1.00[EUR][1000 genomes]
rs16976150	1.00[EUR][1000 genomes]
rs417913	0.86[AFR][1000 genomes]
rs437823	0.86[AFR][1000 genomes]
rs56247021	1.00[EUR][1000 genomes]
rs59776713	1.00[EUR][1000 genomes]
rs7234728	1.00[EUR][1000 genomes]
rs7237020	1.00[EUR][1000 genomes]
rs7238162	1.00[EUR][1000 genomes]
rs73472899	1.00[EUR][1000 genomes]
rs73473245	1.00[EUR][1000 genomes]
rs73473267	1.00[EUR][1000 genomes]
rs73475010	1.00[EUR][1000 genomes]
rs73951582	1.00[EUR][1000 genomes]
rs8087636	0.98[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949609	chr18:39126941-40070286	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv1059409	chr18:39711099-40139446	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv909572	chr18:39938510-40064000	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:40022400-40027200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr18:40023600-40027200	Enhancers	HepG2	liver
3	chr18:40024000-40026800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr18:40024000-40026800	Enhancers	NHDF-Ad	bronchial
5	chr18:40024000-40027000	Enhancers	HSMMtube	muscle
6	chr18:40024400-40026600	Enhancers	Muscle Satellite Cultured Cells	--
7	chr18:40025600-40026600	Enhancers	NH-A	brain
8	chr18:40025600-40026800	Enhancers	HSMM	muscle
9	chr18:40025800-40027000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr18:40025800-40027000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr18:40026000-40026800	Enhancers	Liver	Liver
12	chr18:40026200-40040000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr18:40026400-40026800	Enhancers	Fetal Kidney	kidney

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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