Variant report

Variant	rs8087636
Chromosome Location	chr18:40005607-40005608
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs16960221	1.00[EUR][1000 genomes]
rs16976021	1.00[EUR][1000 genomes]
rs16976124	0.98[AFR][1000 genomes]
rs2060137	1.00[EUR][1000 genomes]
rs417913	0.88[AFR][1000 genomes]
rs437823	0.88[AFR][1000 genomes]
rs56318343	1.00[EUR][1000 genomes]
rs59046070	1.00[EUR][1000 genomes]
rs59980203	1.00[EUR][1000 genomes]
rs61067214	1.00[EUR][1000 genomes]
rs61641935	1.00[EUR][1000 genomes]
rs7229024	1.00[EUR][1000 genomes]
rs73471188	1.00[EUR][1000 genomes]
rs73471193	1.00[EUR][1000 genomes]
rs73951515	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949609	chr18:39126941-40070286	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv1059409	chr18:39711099-40139446	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv909572	chr18:39938510-40064000	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:40005400-40007000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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