Variant report

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs16960221	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16976021	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16976125	0.95[AFR][1000 genomes]
rs16976127	0.97[AFR][1000 genomes]
rs16976130	0.97[AFR][1000 genomes]
rs16976150	0.92[AFR][1000 genomes]
rs346196	0.87[AFR][1000 genomes]
rs56247021	0.97[AFR][1000 genomes]
rs56318343	1.00[EUR][1000 genomes]
rs57636131	0.92[AFR][1000 genomes]
rs59046070	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59776713	0.87[AFR][1000 genomes]
rs59980203	1.00[EUR][1000 genomes]
rs61067214	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61641935	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7229024	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7234728	0.97[AFR][1000 genomes]
rs7237020	0.96[AFR][1000 genomes]
rs7238162	0.97[AFR][1000 genomes]
rs73471188	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73471193	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73472899	0.89[AFR][1000 genomes]
rs73473245	0.96[AFR][1000 genomes]
rs73473267	0.97[AFR][1000 genomes]
rs73951515	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73951582	0.97[AFR][1000 genomes]
rs8087636	1.00[EUR][1000 genomes]
rs971293	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949609	chr18:39126941-40070286	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv1059409	chr18:39711099-40139446	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv909572	chr18:39938510-40064000	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:39993800-39997200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr18:39994000-39997400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr18:39994800-39997000	Weak transcription	Ovary	ovary
4	chr18:39994800-39997200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr18:39995600-39997400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr18:39995800-39998000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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