Variant report

Variant	rs57636131
Chromosome Location	chr18:40019813-40019814
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1431839	0.87[AMR][1000 genomes]
rs16976125	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs16976127	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs16976130	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs16976150	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs16976288	0.87[AMR][1000 genomes]
rs16976292	0.87[AMR][1000 genomes]
rs2060137	0.92[AFR][1000 genomes]
rs346196	0.89[AFR][1000 genomes]
rs56021827	0.87[AMR][1000 genomes]
rs56247021	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs59776713	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7234728	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7237020	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7238162	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73472899	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73473245	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73473267	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73475010	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73951582	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73953438	0.87[AMR][1000 genomes]
rs971293	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949609	chr18:39126941-40070286	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv1059409	chr18:39711099-40139446	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv909572	chr18:39938510-40064000	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:40018200-40022200	Weak transcription	HSMMtube	muscle
2	chr18:40018400-40024200	Weak transcription	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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