Variant report

Variant	rs16976288
Chromosome Location	chr18:40105785-40105786
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10502788	0.87[AMR][1000 genomes]
rs1431839	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16976125	1.00[AMR][1000 genomes]
rs16976127	1.00[AMR][1000 genomes]
rs16976130	1.00[AMR][1000 genomes]
rs16976150	1.00[AMR][1000 genomes]
rs16976256	0.87[AMR][1000 genomes]
rs16976292	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56021827	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56247021	1.00[AMR][1000 genomes]
rs57636131	0.87[AMR][1000 genomes]
rs59776713	1.00[AMR][1000 genomes]
rs60261555	0.87[AMR][1000 genomes]
rs7234728	1.00[AMR][1000 genomes]
rs7237020	1.00[AMR][1000 genomes]
rs7238162	1.00[AMR][1000 genomes]
rs7239930	0.87[AMR][1000 genomes]
rs73472899	1.00[AMR][1000 genomes]
rs73473245	1.00[AMR][1000 genomes]
rs73473267	1.00[AMR][1000 genomes]
rs73475010	1.00[AMR][1000 genomes]
rs73951582	1.00[AMR][1000 genomes]
rs73953438	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8084805	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1059409	chr18:39711099-40139446	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv3447158	chr18:40045478-40320720	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv909573	chr18:40050363-40131269	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	esv2754458	chr18:40070202-40164902	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:40089800-40113000	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr18:40101600-40105800	Weak transcription	Fetal Intestine Large	intestine
3	chr18:40102600-40105800	Weak transcription	Fetal Intestine Small	intestine
4	chr18:40104800-40107400	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr18:40105000-40105800	Enhancers	Gastric	stomach
6	chr18:40105000-40107000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr18:40105400-40107000	Enhancers	Liver	Liver
8	chr18:40105400-40107000	Enhancers	Duodenum Mucosa	Duodenum
9	chr18:40105600-40107000	Enhancers	Stomach Mucosa	stomach

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links