The 2.0 version of rSNPBase

Variant report

Variant rs16976878
Chromosome Location chr15:56658876-56658877
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:47 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr15:56656800-56659000 Active TSS HUES6 Cell Line embryonic stem cell
2 chr15:56656800-56659400 Active TSS HUES48 Cell Line embryonic stem cell
3 chr15:56656800-56659400 Active TSS iPS-20b Cell Line embryonic stem cell
4 chr15:56656800-56659600 Active TSS HUES64 Cell Line embryonic stem cell
5 chr15:56657000-56659400 Active TSS Fetal Brain Male brain
6 chr15:56657000-56659600 Active TSS Fetal Brain Female brain
7 chr15:56657200-56663200 Active TSS GM12878-XiMat blood
8 chr15:56657400-56659000 Active TSS iPS-18 Cell Line embryonic stem cell
9 chr15:56657400-56659600 Active TSS Rectal Mucosa Donor 29 rectum
10 chr15:56657400-56659800 Active TSS Duodenum Mucosa Duodenum
11 chr15:56658000-56662800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
12 chr15:56658200-56659400 Flanking Active TSS Brain Germinal Matrix brain
13 chr15:56658200-56659400 Weak transcription Psoas Muscle Psoas
14 chr15:56658200-56659800 Flanking Active TSS H9 Derived Neuron Cultured Cells ES cell derived
15 chr15:56658200-56661400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
16 chr15:56658200-56661400 Weak transcription Small Intestine intestine
17 chr15:56658200-56675400 Weak transcription Pancreas Pancrea
18 chr15:56658400-56659000 Enhancers H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
19 chr15:56658400-56659000 Flanking Active TSS Foreskin Keratinocyte Primary Cells skin02 Skin
20 chr15:56658400-56659400 Enhancers Brain Cingulate Gyrus brain
21 chr15:56658400-56659800 Flanking Active TSS Ganglion Eminence derived primary cultured neurospheres brain
22 chr15:56658400-56660000 Enhancers ES-UCSF4 Cell Line embryonic stem cell
23 chr15:56658600-56659000 Enhancers ES-WA7 Cell Line embryonic stem cell
24 chr15:56658600-56659600 Flanking Active TSS Pancreatic Islets Pancreatic Islet
25 chr15:56658600-56659600 Enhancers HepG2 liver
26 chr15:56658600-56660400 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
27 chr15:56658800-56659000 Flanking Active TSS ES-I3 Cell Line embryonic stem cell
28 chr15:56658800-56659000 Active TSS H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
29 chr15:56658800-56659000 Enhancers iPS-15b Cell Line embryonic stem cell
30 chr15:56658800-56659000 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
31 chr15:56658800-56659000 Enhancers NHEK skin
32 chr15:56658800-56659200 Weak transcription Skeletal Muscle Female skeletal muscle
33 chr15:56658800-56659400 Active TSS Duodenum Smooth Muscle Duodenum
34 chr15:56658800-56659400 Enhancers Fetal Lung lung
35 chr15:56658800-56659600 Enhancers Cortex derived primary cultured neurospheres brain
36 chr15:56658800-56659600 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
37 chr15:56658800-56659600 Enhancers Fetal Intestine Small intestine
38 chr15:56658800-56659600 Enhancers A549 lung
39 chr15:56658800-56659800 Active TSS Brain Anterior Caudate brain
40 chr15:56658800-56659800 Enhancers Hela-S3 cervix
41 chr15:56658800-56660000 Enhancers Breast Myoepithelial Primary Cells Breast
42 chr15:56658800-56661200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
43 chr15:56658800-56661200 Weak transcription HMEC breast
44 chr15:56658800-56661400 Weak transcription H1 Cell Line embryonic stem cell
45 chr15:56658800-56661400 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
46 chr15:56658800-56661400 Weak transcription Primary B cells from peripheral blood blood
47 chr15:56658800-56669600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived

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Last update: Aug 31, 2015