Variant report

Variant	rs2725865
Chromosome Location	chr15:56648621-56648622
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs10518850	1.00[AMR][1000 genomes]
rs1068681	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1074018	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1087764	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1087765	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1356863	1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs1365164	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1402172	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1582756	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16976878	1.00[AMR][1000 genomes]
rs16976885	1.00[AMR][1000 genomes]
rs16976888	0.88[CHB][hapmap];0.89[JPT][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16976893	0.88[CHB][hapmap];0.89[JPT][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16976896	0.88[CHB][hapmap];0.89[JPT][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16976904	1.00[AMR][1000 genomes]
rs16976913	1.00[AMR][1000 genomes]
rs16976915	1.00[AMR][1000 genomes]
rs17841132	1.00[AMR][1000 genomes]
rs2194942	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2465972	0.88[ASN][1000 genomes]
rs2554289	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2554290	0.96[ASN][1000 genomes]
rs2554291	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2554292	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2554293	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2554294	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2682020	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2682028	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2682035	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2682036	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2682037	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2682039	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2682042	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2682052	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2682063	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2682068	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2713901	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2713915	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2713920	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2713928	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2718903	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2718911	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2718916	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2718929	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2718931	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2718932	0.88[ASN][1000 genomes]
rs2718940	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2718946	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2718948	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2725845	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2725866	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2725868	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2725869	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28369022	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28408440	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28545512	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28567497	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28572531	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28609291	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28678726	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28714692	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28721891	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28756289	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28790092	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28790997	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28801764	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28878210	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3985756	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3985760	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs705451	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs724099	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs795778	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs795779	0.85[JPT][hapmap];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs795789	0.88[CHB][hapmap];0.89[JPT][hapmap];1.00[EUR][1000 genomes]
rs795794	0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs795795	0.88[CHB][hapmap];0.89[JPT][hapmap];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs795796	0.88[CHB][hapmap];0.89[JPT][hapmap];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs797066	0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs808731	0.88[CHB][hapmap];0.89[JPT][hapmap]
rs811257	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9920137	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833019	chr15:56486029-56649933	Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56637800-56657000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr15:56644000-56656800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr15:56646600-56648800	Weak transcription	NHDF-Ad	bronchial
4	chr15:56647800-56650600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr15:56648200-56649400	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr15:56648200-56649400	Enhancers	Osteobl	bone
7	chr15:56648200-56649600	Enhancers	HSMMtube	muscle
8	chr15:56648400-56649000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr15:56648400-56649200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr15:56648400-56649400	Enhancers	GM12878-XiMat	blood
11	chr15:56648600-56649200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr15:56648600-56649200	Enhancers	NHEK	skin
13	chr15:56648600-56649400	Enhancers	Muscle Satellite Cultured Cells	--
14	chr15:56648600-56649400	Enhancers	Skeletal Muscle Male	skeletal muscle
15	chr15:56648600-56649600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr15:56648600-56649600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr15:56648600-56649600	Enhancers	HSMM	muscle

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