Variant report

Variant	rs2718929
Chromosome Location	chr15:56545177-56545178
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:56533157..56539020-chr15:56544541..56548879,7	K562	blood:

Variant related genes	Relation type
ENSG00000181827	Chromatin interaction
ENSG00000151575	Chromatin interaction

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs1068681	1.00[EUR][1000 genomes]
rs1074018	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1087764	1.00[EUR][1000 genomes]
rs1087765	1.00[EUR][1000 genomes]
rs1365164	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1402172	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1582756	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs16976888	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs16976893	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs16976896	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2194942	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2465972	1.00[ASN][1000 genomes]
rs2554289	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2554290	0.92[ASN][1000 genomes]
rs2554291	0.88[ASN][1000 genomes]
rs2554292	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2554293	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2554294	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2682020	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2682028	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2682035	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2682036	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2682037	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2682039	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2682042	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2682052	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2713915	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2713920	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2713928	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2718903	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2718911	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2718916	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2718931	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2718932	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2718946	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2718948	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2725865	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2725866	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2725868	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2725869	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28369022	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs28408440	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs28545512	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs28567497	1.00[EUR][1000 genomes]
rs28572531	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs28609291	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs28678726	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs28714692	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs28721891	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs28756289	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs28790092	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs28790997	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs28801764	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs28878210	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3985756	1.00[EUR][1000 genomes]
rs3985760	1.00[EUR][1000 genomes]
rs705451	1.00[EUR][1000 genomes]
rs724099	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs795789	1.00[EUR][1000 genomes]
rs795794	1.00[EUR][1000 genomes]
rs795795	1.00[EUR][1000 genomes]
rs795796	1.00[EUR][1000 genomes]
rs797066	1.00[EUR][1000 genomes]
rs811257	1.00[EUR][1000 genomes]
rs9920137	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833019	chr15:56486029-56649933	Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv569547	chr15:56504598-56572176	ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56538200-56546600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr15:56538400-56546000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr15:56538800-56546400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr15:56538800-56546600	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr15:56543000-56545200	Enhancers	K562	blood
6	chr15:56543200-56545200	Enhancers	Primary hematopoietic stem cells	blood
7	chr15:56543600-56545600	Enhancers	Fetal Intestine Small	intestine
8	chr15:56543800-56545200	Enhancers	Primary hematopoietic stem cells short term culture	blood

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