Variant report

Variant	rs2718946
Chromosome Location	chr15:56582416-56582417
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:56582054..56583561-chr15:56587969..56590161,2	MCF-7	breast:

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs1068681	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1074018	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1087764	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1087765	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs13329272	0.92[MKK][hapmap]
rs13379617	1.00[ASW][hapmap];0.86[MKK][hapmap]
rs13380064	1.00[ASW][hapmap];0.86[MKK][hapmap]
rs1356863	1.00[JPT][hapmap];0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1365164	1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1402172	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1582756	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs16976888	0.88[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs16976893	1.00[ASW][hapmap];0.88[CHB][hapmap];0.94[CHD][hapmap];0.85[GIH][hapmap];0.89[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs16976896	1.00[ASW][hapmap];0.88[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];0.89[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2194942	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2465972	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2554289	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2554290	0.97[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs2554291	0.88[ASN][1000 genomes]
rs2554292	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2554293	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2554294	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2682020	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2682028	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2682035	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2682036	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2682037	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2682039	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2682042	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2682052	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2682063	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2682068	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2713901	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.92[MKK][hapmap];1.00[YRI][hapmap]
rs2713903	0.91[YRI][hapmap];0.84[AFR][1000 genomes]
rs2713915	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2713920	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2713928	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2718903	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2718911	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2718916	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2718929	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2718931	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2718932	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2718940	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2718948	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2725845	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2725865	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2725866	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2725868	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2725869	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28369022	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs28408440	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs28545512	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs28567497	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28572531	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs28609291	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs28678726	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs28714692	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs28721891	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs28756289	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs28790092	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs28790997	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs28801764	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs28878210	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3985756	1.00[EUR][1000 genomes]
rs3985760	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs705451	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs724099	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs795778	1.00[EUR][1000 genomes]
rs795779	0.85[JPT][hapmap];1.00[EUR][1000 genomes]
rs795789	0.88[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs795794	0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs795795	0.88[CHB][hapmap];0.89[JPT][hapmap];0.91[YRI][hapmap];0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs795796	0.88[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs795798	0.85[AFR][1000 genomes]
rs797066	1.00[ASW][hapmap];0.88[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs808731	1.00[ASW][hapmap];0.88[CHB][hapmap];0.94[CHD][hapmap];0.89[JPT][hapmap];0.86[MKK][hapmap]
rs811257	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9920137	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833019	chr15:56486029-56649933	Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56582000-56584600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:56582200-56582600	Enhancers	Placenta	Placenta
3	chr15:56582400-56584800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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