Variant report
| Variant | rs2713903 |
|---|---|
| Chromosome Location | chr15:56610514-56610515 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr15:56610264..56612572-chr15:56615579..56617540,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000261174 | TF binding region |
rSNPs within LD-proxies of this variant (count:37)
| rs_ID | r2[population] |
|---|---|
| rs1087836 | 0.80[ASN][1000 genomes] |
| rs1087838 | 0.91[CHB][hapmap];0.95[JPT][hapmap] |
| rs12593348 | 0.84[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs12593453 | 0.88[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs12594941 | 0.88[EUR][1000 genomes] |
| rs16976847 | 1.00[CEU][hapmap];0.88[EUR][1000 genomes] |
| rs16976888 | 0.92[YRI][hapmap] |
| rs16976893 | 0.91[YRI][hapmap] |
| rs16976896 | 0.91[YRI][hapmap] |
| rs1863427 | 0.88[EUR][1000 genomes] |
| rs2263567 | 0.88[EUR][1000 genomes] |
| rs2554286 | 0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2554289 | 0.82[AFR][1000 genomes] |
| rs2554290 | 0.82[AFR][1000 genomes] |
| rs2681977 | 0.96[CHB][hapmap];0.91[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs2682020 | 0.82[AFR][1000 genomes] |
| rs2682035 | 0.92[YRI][hapmap] |
| rs2682063 | 0.92[YRI][hapmap] |
| rs2682068 | 0.92[YRI][hapmap] |
| rs2713901 | 0.91[YRI][hapmap] |
| rs2713915 | 0.82[AFR][1000 genomes] |
| rs2713932 | 0.86[ASN][1000 genomes] |
| rs2718930 | 0.95[CHB][hapmap];0.82[JPT][hapmap] |
| rs2718940 | 1.00[YRI][hapmap] |
| rs2718946 | 0.84[AFR][1000 genomes] |
| rs2718948 | 0.84[AFR][1000 genomes] |
| rs2725842 | 0.82[ASN][1000 genomes] |
| rs2725866 | 0.91[YRI][hapmap] |
| rs2725869 | 0.92[YRI][hapmap] |
| rs4142479 | 1.00[CEU][hapmap] |
| rs58851049 | 0.92[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs59232912 | 0.96[AMR][1000 genomes] |
| rs60861096 | 0.88[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs795784 | 0.81[ASN][1000 genomes] |
| rs795789 | 0.92[YRI][hapmap] |
| rs795795 | 0.83[YRI][hapmap] |
| rs795796 | 0.92[YRI][hapmap] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv833019 | chr15:56486029-56649933 | Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
