Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TBP	chr15:56614308-56614810	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:56613331..56614994-chr15:56619251..56621411,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000261174	TF binding region

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1087836	0.88[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1087838	0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11488881	0.84[AMR][1000 genomes]
rs12050881	0.81[AMR][1000 genomes]
rs12591109	0.84[AMR][1000 genomes]
rs12591303	0.84[AMR][1000 genomes]
rs12593348	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12593453	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12594941	0.88[EUR][1000 genomes]
rs16976847	0.88[EUR][1000 genomes]
rs1863427	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2263567	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2681977	0.84[ASN][1000 genomes]
rs2713903	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2713932	0.82[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs2725842	0.84[ASN][1000 genomes]
rs4142479	0.88[AMR][1000 genomes]
rs58619937	0.84[AMR][1000 genomes]
rs58851049	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs59232912	0.84[AMR][1000 genomes]
rs60861096	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs795784	0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833019	chr15:56486029-56649933	Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56612000-56614600	Enhancers	Duodenum Mucosa	Duodenum
2	chr15:56612600-56614600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr15:56612600-56614600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr15:56613400-56623400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr15:56613600-56614600	Weak transcription	K562	blood
6	chr15:56613600-56616800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr15:56613800-56619600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr15:56614200-56614600	Enhancers	Placenta	Placenta
9	chr15:56614400-56616800	Weak transcription	NHEK	skin

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