Variant report

Variant	rs2465972
Chromosome Location	chr15:56553009-56553010
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs1074018	0.82[ASN][1000 genomes]
rs1365164	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1402172	0.88[ASN][1000 genomes]
rs1582756	0.80[ASN][1000 genomes]
rs16976888	0.88[CHB][hapmap];0.89[JPT][hapmap];0.80[ASN][1000 genomes]
rs16976893	0.88[CHB][hapmap];0.89[JPT][hapmap];0.80[ASN][1000 genomes]
rs16976896	0.88[CHB][hapmap];0.89[JPT][hapmap];0.80[ASN][1000 genomes]
rs2194942	0.92[ASN][1000 genomes]
rs2554289	0.92[ASN][1000 genomes]
rs2554290	0.92[ASN][1000 genomes]
rs2554291	0.88[ASN][1000 genomes]
rs2554292	0.88[ASN][1000 genomes]
rs2554293	0.88[ASN][1000 genomes]
rs2554294	0.88[ASN][1000 genomes]
rs2682020	0.92[ASN][1000 genomes]
rs2682028	0.88[ASN][1000 genomes]
rs2682035	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs2682036	0.88[ASN][1000 genomes]
rs2682037	0.88[ASN][1000 genomes]
rs2682039	0.88[ASN][1000 genomes]
rs2682042	0.84[ASN][1000 genomes]
rs2682052	1.00[ASN][1000 genomes]
rs2682063	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2682068	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2713901	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2713915	0.92[ASN][1000 genomes]
rs2713920	0.92[ASN][1000 genomes]
rs2713928	0.88[ASN][1000 genomes]
rs2718903	0.88[ASN][1000 genomes]
rs2718911	0.88[ASN][1000 genomes]
rs2718916	0.88[ASN][1000 genomes]
rs2718929	1.00[ASN][1000 genomes]
rs2718931	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2718932	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2718940	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2718946	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2718948	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2725865	0.88[ASN][1000 genomes]
rs2725866	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs2725868	0.86[ASN][1000 genomes]
rs2725869	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs28369022	0.80[ASN][1000 genomes]
rs28408440	0.80[ASN][1000 genomes]
rs28545512	0.80[ASN][1000 genomes]
rs28572531	0.80[ASN][1000 genomes]
rs28609291	0.80[ASN][1000 genomes]
rs28678726	0.80[ASN][1000 genomes]
rs28714692	0.80[ASN][1000 genomes]
rs28721891	0.80[ASN][1000 genomes]
rs28756289	0.80[ASN][1000 genomes]
rs28790092	0.80[ASN][1000 genomes]
rs28790997	0.80[ASN][1000 genomes]
rs28801764	0.80[ASN][1000 genomes]
rs28878210	0.80[ASN][1000 genomes]
rs724099	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs795779	0.85[JPT][hapmap]
rs795789	0.88[CHB][hapmap];0.89[JPT][hapmap]
rs795794	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs795795	0.88[CHB][hapmap];0.89[JPT][hapmap]
rs795796	0.88[CHB][hapmap];0.89[JPT][hapmap]
rs797066	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs808731	0.88[CHB][hapmap];0.89[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833019	chr15:56486029-56649933	Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv569547	chr15:56504598-56572176	ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56548600-56553800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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