Variant report

Variant	rs16976969
Chromosome Location	chr18:40401326-40401327
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10502802	0.85[YRI][hapmap]
rs16976972	1.00[YRI][hapmap];0.99[AFR][1000 genomes]
rs16976979	0.95[YRI][hapmap]
rs16976993	0.95[YRI][hapmap]
rs16976994	0.95[YRI][hapmap]
rs16977004	0.95[YRI][hapmap]
rs16977029	0.95[YRI][hapmap]
rs16977056	0.90[YRI][hapmap];0.85[AFR][1000 genomes]
rs73470101	0.81[AFR][1000 genomes]
rs8085000	0.95[YRI][hapmap]
rs8087737	0.90[YRI][hapmap];0.84[AFR][1000 genomes]
rs8088908	0.90[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1056794	chr18:40197837-40688514	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:40396200-40403000	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr18:40397000-40401400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr18:40397600-40402000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr18:40399800-40401400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr18:40400000-40401800	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr18:40400000-40402400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr18:40400000-40403000	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr18:40400800-40402200	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr18:40400800-40403000	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr18:40401200-40403000	Enhancers	iPS-20b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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