Variant report

Variant	rs16977029
Chromosome Location	chr18:40412344-40412345
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10502802	0.80[YRI][hapmap]
rs16976953	0.83[YRI][hapmap];0.90[AFR][1000 genomes]
rs16976969	0.95[YRI][hapmap]
rs16976972	0.94[YRI][hapmap];0.81[AFR][1000 genomes]
rs16976979	0.89[YRI][hapmap]
rs16976993	0.90[YRI][hapmap]
rs16976994	1.00[YRI][hapmap]
rs16977004	0.90[YRI][hapmap]
rs16977056	0.85[YRI][hapmap]
rs57075734	0.89[AFR][1000 genomes]
rs58606559	0.86[AFR][1000 genomes]
rs73470098	1.00[AFR][1000 genomes]
rs73486752	0.89[AFR][1000 genomes]
rs73486754	0.89[AFR][1000 genomes]
rs8085000	1.00[YRI][hapmap]
rs8087737	0.85[YRI][hapmap]
rs8088908	0.85[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1056794	chr18:40197837-40688514	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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