Variant report

Variant	rs73486754
Chromosome Location	chr18:40396538-40396539
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs16976953	0.98[AFR][1000 genomes]
rs57075734	1.00[AFR][1000 genomes]
rs58606559	0.97[AFR][1000 genomes]
rs73470098	0.89[AFR][1000 genomes]
rs73486752	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1056794	chr18:40197837-40688514	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:40388000-40396800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr18:40396200-40397000	Enhancers	H9 Cell Line	embryonic stem cell
3	chr18:40396200-40397800	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr18:40396200-40397800	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr18:40396200-40398000	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr18:40396200-40398200	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr18:40396200-40399800	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr18:40396200-40403000	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr18:40396400-40397600	Enhancers	H1 Cell Line	embryonic stem cell
10	chr18:40396400-40399000	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr18:40396400-40400400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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