Variant report

Variant	rs16976953
Chromosome Location	chr18:40393115-40393116
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs16976994	0.83[YRI][hapmap]
rs16977029	0.83[YRI][hapmap]
rs57075734	0.98[AFR][1000 genomes]
rs58606559	0.95[AFR][1000 genomes]
rs73470098	0.90[AFR][1000 genomes]
rs73486752	0.98[AFR][1000 genomes]
rs73486754	0.98[AFR][1000 genomes]
rs8085000	0.83[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1056794	chr18:40197837-40688514	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:40388000-40396800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr18:40389400-40396200	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr18:40389400-40396200	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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