Variant report

Variant	rs16977226
Chromosome Location	chr15:57350251-57350252
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:57344697..57346237-chr15:57349958..57351600,2	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10152156	1.00[EUR][1000 genomes]
rs12593585	1.00[EUR][1000 genomes]
rs12593613	1.00[EUR][1000 genomes]
rs12594574	1.00[EUR][1000 genomes]
rs16953313	0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs16977152	0.91[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs16977165	1.00[EUR][1000 genomes]
rs35615435	1.00[EUR][1000 genomes]
rs3803456	0.91[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs56193354	1.00[EUR][1000 genomes]
rs57722526	1.00[EUR][1000 genomes]
rs58121543	1.00[EUR][1000 genomes]
rs58169256	1.00[EUR][1000 genomes]
rs60056005	1.00[EUR][1000 genomes]
rs60219100	1.00[EUR][1000 genomes]
rs60972002	1.00[EUR][1000 genomes]
rs61382868	1.00[EUR][1000 genomes]
rs74018413	1.00[EUR][1000 genomes]
rs74018420	1.00[EUR][1000 genomes]
rs74018424	1.00[EUR][1000 genomes]
rs74018426	1.00[EUR][1000 genomes]
rs74018429	1.00[EUR][1000 genomes]
rs74018439	1.00[EUR][1000 genomes]
rs74018441	1.00[EUR][1000 genomes]
rs74018460	1.00[EUR][1000 genomes]
rs9806657	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042486	chr15:57094598-57505992	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv904251	chr15:57241970-57575916	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57324600-57355800	Weak transcription	Primary B cells from cord blood	blood
2	chr15:57324600-57398600	Weak transcription	Fetal Muscle Leg	muscle
3	chr15:57328200-57353600	Weak transcription	Pancreas	Pancrea
4	chr15:57328600-57355000	Weak transcription	Dnd41	blood
5	chr15:57329800-57351400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr15:57332000-57355800	Weak transcription	Primary B cells from peripheral blood	blood
7	chr15:57336600-57371800	Weak transcription	K562	blood
8	chr15:57337600-57351200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr15:57339600-57355600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr15:57339800-57361600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr15:57340200-57372600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr15:57343800-57363400	Weak transcription	Aorta	Aorta
13	chr15:57344000-57351400	Weak transcription	Fetal Brain Female	brain
14	chr15:57344400-57351400	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr15:57344600-57363600	Weak transcription	Right Atrium	heart
16	chr15:57346000-57374400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr15:57346400-57352800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr15:57346600-57355000	Weak transcription	Primary hematopoietic stem cells	blood
19	chr15:57346800-57351400	Weak transcription	HSMMtube	muscle
20	chr15:57347000-57373400	Weak transcription	Fetal Intestine Small	intestine
21	chr15:57347200-57356200	Weak transcription	Fetal Kidney	kidney
22	chr15:57347600-57373000	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr15:57347600-57373200	Weak transcription	Fetal Intestine Large	intestine
24	chr15:57348200-57361800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
25	chr15:57348600-57356800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr15:57348800-57350400	Enhancers	Left Ventricle	heart
27	chr15:57348800-57350400	Enhancers	Ovary	ovary
28	chr15:57348800-57350600	Enhancers	Adipose Nuclei	Adipose
29	chr15:57348800-57350600	Enhancers	Brain Angular Gyrus	brain
30	chr15:57348800-57355000	Enhancers	Osteobl	bone
31	chr15:57349000-57350400	Enhancers	ES-I3 Cell Line	embryonic stem cell
32	chr15:57349000-57350400	Enhancers	Brain Anterior Caudate	brain
33	chr15:57349000-57350600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr15:57349000-57350600	Enhancers	HUES64 Cell Line	embryonic stem cell
35	chr15:57349000-57350600	Enhancers	Breast Myoepithelial Primary Cells	Breast
36	chr15:57349000-57350800	Enhancers	Brain Inferior Temporal Lobe	brain
37	chr15:57349000-57354400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr15:57349200-57350400	Enhancers	iPS-15b Cell Line	embryonic stem cell
39	chr15:57349200-57350400	Enhancers	Skeletal Muscle Female	skeletal muscle
40	chr15:57349200-57350600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr15:57349200-57350600	Enhancers	A549	lung
42	chr15:57349200-57350600	Flanking Active TSS	GM12878-XiMat	blood
43	chr15:57349200-57350800	Enhancers	NHDF-Ad	bronchial
44	chr15:57349200-57353800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr15:57349200-57355400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr15:57349200-57356600	Enhancers	Brain Substantia Nigra	brain
47	chr15:57349400-57350400	Enhancers	Primary T helper cells PMA-I stimulated	--
48	chr15:57349400-57350400	Enhancers	Right Ventricle	heart
49	chr15:57349400-57350400	Enhancers	Small Intestine	intestine
50	chr15:57349400-57350600	Enhancers	NH-A	brain

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