Variant report

Variant	rs60219100
Chromosome Location	chr15:57257569-57257570
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:57254985..57258076-chr15:57265765..57268821,3	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs12593585	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12593613	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12594574	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16953313	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16977152	1.00[EUR][1000 genomes]
rs16977165	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16977226	1.00[EUR][1000 genomes]
rs213147	0.81[ASN][1000 genomes]
rs35615435	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3803456	1.00[EUR][1000 genomes]
rs56193354	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs57722526	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58121543	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58169256	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60056005	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60972002	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61382868	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs74018413	1.00[EUR][1000 genomes]
rs74018420	1.00[EUR][1000 genomes]
rs74018424	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74018426	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74018429	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs74018439	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs74018441	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs74018460	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042486	chr15:57094598-57505992	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv542393	chr15:57115116-57341363	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv904250	chr15:57225766-57294085	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv1052052	chr15:57232111-57344561	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv542394	chr15:57232111-57344561	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	nsv904251	chr15:57241970-57575916	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57227600-57260600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr15:57228200-57260600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr15:57244200-57257800	Weak transcription	Fetal Intestine Small	intestine
4	chr15:57251000-57259200	Weak transcription	Right Atrium	heart
5	chr15:57251000-57260600	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr15:57251000-57261000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr15:57251800-57260800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr15:57253800-57259000	Enhancers	A549	lung
9	chr15:57254200-57258000	Enhancers	Primary T helper cells PMA-I stimulated	--
10	chr15:57254400-57259000	Enhancers	Brain Substantia Nigra	brain
11	chr15:57254400-57259000	Enhancers	HepG2	liver
12	chr15:57254600-57258000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
13	chr15:57254600-57258200	Enhancers	NHDF-Ad	bronchial
14	chr15:57254800-57257800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr15:57254800-57259000	Enhancers	Brain Hippocampus Middle	brain
16	chr15:57255000-57259000	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr15:57255000-57259800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr15:57255400-57257800	Enhancers	Primary T killer memory cells from peripheral blood	blood
19	chr15:57256200-57257600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr15:57256200-57260800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr15:57256200-57260800	Weak transcription	Stomach Mucosa	stomach
22	chr15:57256200-57263400	Weak transcription	Lung	lung
23	chr15:57256200-57264400	Weak transcription	NH-A	brain
24	chr15:57256200-57265200	Weak transcription	Fetal Brain Male	brain
25	chr15:57256200-57265800	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr15:57256400-57257800	Weak transcription	Small Intestine	intestine
27	chr15:57256400-57260000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr15:57256400-57261400	Weak transcription	Placenta Amnion	Placenta Amnion
29	chr15:57256400-57263600	Weak transcription	Brain Germinal Matrix	brain
30	chr15:57256400-57264000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
31	chr15:57256400-57265200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
32	chr15:57256600-57257800	Weak transcription	Duodenum Mucosa	Duodenum
33	chr15:57256600-57259000	Enhancers	Primary T cells from cord blood	blood
34	chr15:57256600-57260800	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr15:57256800-57257800	Weak transcription	Liver	Liver
36	chr15:57256800-57257800	Weak transcription	Fetal Thymus	thymus
37	chr15:57256800-57258200	Enhancers	GM12878-XiMat	blood
38	chr15:57256800-57258600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
39	chr15:57256800-57259000	Weak transcription	Left Ventricle	heart
40	chr15:57256800-57259600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr15:57256800-57259600	Weak transcription	Brain Cingulate Gyrus	brain
42	chr15:57256800-57259600	Weak transcription	Brain Inferior Temporal Lobe	brain
43	chr15:57256800-57259600	Weak transcription	Colon Smooth Muscle	Colon
44	chr15:57256800-57259600	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr15:57256800-57259600	Weak transcription	Rectal Smooth Muscle	rectum
46	chr15:57256800-57259600	Weak transcription	Right Ventricle	heart
47	chr15:57256800-57259600	Weak transcription	Thymus	Thymus
48	chr15:57256800-57259600	Weak transcription	K562	blood
49	chr15:57256800-57259800	Weak transcription	Brain Angular Gyrus	brain
50	chr15:57256800-57259800	Weak transcription	Ovary	ovary

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