Variant report

Variant	rs16978561
Chromosome Location	chr18:43985704-43985705
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs28689134	0.89[AFR][1000 genomes]
rs3889748	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs58048630	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59158010	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60350327	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9646520	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:43973600-43991400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr18:43974200-43990400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr18:43978800-43986200	Weak transcription	Fetal Stomach	stomach
4	chr18:43979800-43986200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr18:43981200-43987800	Weak transcription	GM12878-XiMat	blood
6	chr18:43981800-43990200	Weak transcription	Lung	lung
7	chr18:43981800-43991800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr18:43982000-43986600	Weak transcription	Colon Smooth Muscle	Colon
9	chr18:43983000-43989600	Weak transcription	Fetal Lung	lung
10	chr18:43983200-43988200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr18:43983200-43991200	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr18:43985000-43987800	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr18:43985000-43995200	Enhancers	Fetal Heart	heart
14	chr18:43985200-43986800	Enhancers	Esophagus	oesophagus
15	chr18:43985200-43988400	Enhancers	Fetal Muscle Trunk	muscle
16	chr18:43985200-43988600	Enhancers	Right Atrium	heart
17	chr18:43985200-43989800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
18	chr18:43985200-43997000	Enhancers	Fetal Muscle Leg	muscle
19	chr18:43985200-43997400	Enhancers	Left Ventricle	heart
20	chr18:43985200-43997800	Enhancers	Right Ventricle	heart
21	chr18:43985200-44000600	Enhancers	Breast Myoepithelial Primary Cells	Breast
22	chr18:43985400-43985800	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr18:43985400-43987200	Enhancers	Stomach Smooth Muscle	stomach
24	chr18:43985600-43986000	Weak transcription	Psoas Muscle	Psoas
25	chr18:43985600-43986600	Weak transcription	Brain Anterior Caudate	brain

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