Variant report

Variant	rs28689134
Chromosome Location	chr18:43985108-43985109
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs16978560	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16978561	0.89[AFR][1000 genomes]
rs28463123	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28488658	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28625493	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28642302	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs28700072	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9966500	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:43969200-43985200	Weak transcription	Right Atrium	heart
2	chr18:43973600-43991400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr18:43974200-43990400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr18:43978600-43985200	Weak transcription	Esophagus	oesophagus
5	chr18:43978800-43986200	Weak transcription	Fetal Stomach	stomach
6	chr18:43979800-43986200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr18:43980200-43985400	Weak transcription	Stomach Smooth Muscle	stomach
8	chr18:43980600-43985200	Weak transcription	Left Ventricle	heart
9	chr18:43980600-43985200	Weak transcription	Right Ventricle	heart
10	chr18:43981200-43987800	Weak transcription	GM12878-XiMat	blood
11	chr18:43981800-43990200	Weak transcription	Lung	lung
12	chr18:43981800-43991800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr18:43982000-43986600	Weak transcription	Colon Smooth Muscle	Colon
14	chr18:43983000-43985200	Weak transcription	Fetal Muscle Trunk	muscle
15	chr18:43983000-43989600	Weak transcription	Fetal Lung	lung
16	chr18:43983200-43985200	Weak transcription	Fetal Muscle Leg	muscle
17	chr18:43983200-43985200	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr18:43983200-43988200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr18:43983200-43991200	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr18:43983400-43985200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr18:43983400-43985200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr18:43983400-43985200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr18:43983400-43985400	Weak transcription	Psoas Muscle	Psoas
24	chr18:43985000-43987800	Enhancers	Skeletal Muscle Male	skeletal muscle
25	chr18:43985000-43995200	Enhancers	Fetal Heart	heart

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