Variant report

Variant	rs28642302
Chromosome Location	chr18:43982953-43982954
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:43981917..43984385-chr18:43994291..43996366,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs16978560	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs28463123	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs28488658	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs28625493	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs28689134	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs28700072	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs3889748	0.84[AFR][1000 genomes]
rs9966500	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes]

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:43969200-43985200	Weak transcription	Right Atrium	heart
2	chr18:43973600-43991400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr18:43974200-43990400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr18:43975200-43983400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
5	chr18:43977000-43983200	Enhancers	Fetal Muscle Leg	muscle
6	chr18:43977200-43983000	Weak transcription	Psoas Muscle	Psoas
7	chr18:43978600-43985200	Weak transcription	Esophagus	oesophagus
8	chr18:43978800-43986200	Weak transcription	Fetal Stomach	stomach
9	chr18:43979800-43986200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr18:43980200-43985400	Weak transcription	Stomach Smooth Muscle	stomach
11	chr18:43980600-43985200	Weak transcription	Left Ventricle	heart
12	chr18:43980600-43985200	Weak transcription	Right Ventricle	heart
13	chr18:43980800-43985000	Weak transcription	Fetal Heart	heart
14	chr18:43981200-43987800	Weak transcription	GM12878-XiMat	blood
15	chr18:43981800-43990200	Weak transcription	Lung	lung
16	chr18:43981800-43991800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr18:43982000-43986600	Weak transcription	Colon Smooth Muscle	Colon
18	chr18:43982600-43983400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr18:43982600-43983400	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr18:43982800-43983000	Enhancers	Fetal Lung	lung
21	chr18:43982800-43983000	Enhancers	Fetal Muscle Trunk	muscle
22	chr18:43982800-43983200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr18:43982800-43983200	Enhancers	H9 Cell Line	embryonic stem cell
24	chr18:43982800-43983200	Enhancers	Skeletal Muscle Female	skeletal muscle
25	chr18:43982800-43983600	Enhancers	Skeletal Muscle Male	skeletal muscle

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