The 2.0 version of rSNPBase

Variant report

Variant rs16978902
Chromosome Location chr19:38490438-38490439
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:94 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:38461600-38493600 Weak transcription Primary mononuclear cells fromperipheralblood Blood
2 chr19:38461600-38493600 Weak transcription Stomach Smooth Muscle stomach
3 chr19:38470800-38494000 Weak transcription Right Ventricle heart
4 chr19:38471200-38493800 Weak transcription Pancreatic Islets Pancreatic Islet
5 chr19:38472400-38493800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
6 chr19:38474800-38513600 Weak transcription Gastric stomach
7 chr19:38477400-38491800 Weak transcription Primary T helper naive cells fromperipheralblood blood
8 chr19:38477600-38493800 Weak transcription Thymus Thymus
9 chr19:38479200-38493800 Weak transcription Colonic Mucosa Colon
10 chr19:38480000-38493600 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
11 chr19:38480000-38493600 Weak transcription Primary hematopoietic stem cells blood
12 chr19:38480000-38493800 Weak transcription Rectal Mucosa Donor 29 rectum
13 chr19:38481000-38493800 Weak transcription Small Intestine intestine
14 chr19:38482200-38493800 Weak transcription Brain Inferior Temporal Lobe brain
15 chr19:38482400-38490600 Strong transcription Fetal Intestine Small intestine
16 chr19:38482400-38493600 Weak transcription Brain Hippocampus Middle brain
17 chr19:38482400-38493800 Weak transcription HUES64 Cell Line embryonic stem cell
18 chr19:38482400-38493800 Weak transcription iPS-15b Cell Line embryonic stem cell
19 chr19:38482600-38493800 Weak transcription iPS-18 Cell Line embryonic stem cell
20 chr19:38482600-38494000 Weak transcription ES-WA7 Cell Line embryonic stem cell
21 chr19:38482600-38494000 Weak transcription Esophagus oesophagus
22 chr19:38482800-38493000 Weak transcription Primary T cells fromperipheralblood blood
23 chr19:38482800-38493400 Weak transcription Stomach Mucosa stomach
24 chr19:38483000-38493600 Weak transcription Brain Cingulate Gyrus brain
25 chr19:38483800-38493600 Weak transcription H1 Cell Line embryonic stem cell
26 chr19:38484600-38493800 Weak transcription Rectal Smooth Muscle rectum
27 chr19:38485600-38493600 Weak transcription Duodenum Mucosa Duodenum
28 chr19:38485600-38493800 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
29 chr19:38485800-38493600 Weak transcription Lung lung
30 chr19:38485800-38493800 Weak transcription HUES6 Cell Line embryonic stem cell
31 chr19:38485800-38496000 Weak transcription Sigmoid Colon Sigmoid Colon
32 chr19:38486200-38491200 Weak transcription Primary T cells from cord blood blood
33 chr19:38486400-38493800 Weak transcription Fetal Intestine Large intestine
34 chr19:38487800-38491000 Enhancers HMEC breast
35 chr19:38488400-38490600 Enhancers NHEK skin
36 chr19:38488400-38490800 Enhancers Fetal Muscle Leg muscle
37 chr19:38488400-38491000 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
38 chr19:38488400-38493800 Enhancers Primary B cells from peripheral blood blood
39 chr19:38488600-38490600 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
40 chr19:38488600-38490600 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
41 chr19:38488600-38490600 Enhancers Placenta Placenta
42 chr19:38488600-38490800 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin
43 chr19:38488600-38490800 Enhancers Fetal Adrenal Gland Adrenal Gland
44 chr19:38488600-38491000 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
45 chr19:38488600-38491400 Enhancers NHLF lung
46 chr19:38488800-38493600 Weak transcription ES-I3 Cell Line embryonic stem cell
47 chr19:38489000-38490600 Enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
48 chr19:38489000-38490600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
49 chr19:38489000-38492800 Weak transcription Cortex derived primary cultured neurospheres brain
50 chr19:38489000-38493600 Weak transcription Brain Angular Gyrus brain

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Last update: Aug 31, 2015