Variant report

Variant	rs56880853
Chromosome Location	chr19:38491517-38491518
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:38486249..38487777-chr19:38491320..38494076,2	K562	blood:
2	chr19:38490534..38492091-chr19:38493465..38495322,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11881503	0.80[AFR][1000 genomes]
rs16978902	0.84[AFR][1000 genomes]
rs7248658	0.83[AFR][1000 genomes]
rs8105848	0.84[AFR][1000 genomes]
rs8113411	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949296	chr19:38034722-38763140	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:38461600-38493600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr19:38461600-38493600	Weak transcription	Stomach Smooth Muscle	stomach
3	chr19:38470800-38494000	Weak transcription	Right Ventricle	heart
4	chr19:38471200-38493800	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr19:38472400-38493800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr19:38474800-38513600	Weak transcription	Gastric	stomach
7	chr19:38477400-38491800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr19:38477600-38493800	Weak transcription	Thymus	Thymus
9	chr19:38479200-38493800	Weak transcription	Colonic Mucosa	Colon
10	chr19:38480000-38493600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr19:38480000-38493600	Weak transcription	Primary hematopoietic stem cells	blood
12	chr19:38480000-38493800	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr19:38481000-38493800	Weak transcription	Small Intestine	intestine
14	chr19:38482200-38493800	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr19:38482400-38493600	Weak transcription	Brain Hippocampus Middle	brain
16	chr19:38482400-38493800	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr19:38482400-38493800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr19:38482600-38493800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr19:38482600-38494000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
20	chr19:38482600-38494000	Weak transcription	Esophagus	oesophagus
21	chr19:38482800-38493000	Weak transcription	Primary T cells fromperipheralblood	blood
22	chr19:38482800-38493400	Weak transcription	Stomach Mucosa	stomach
23	chr19:38483000-38493600	Weak transcription	Brain Cingulate Gyrus	brain
24	chr19:38483800-38493600	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr19:38484600-38493800	Weak transcription	Rectal Smooth Muscle	rectum
26	chr19:38485600-38493600	Weak transcription	Duodenum Mucosa	Duodenum
27	chr19:38485600-38493800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr19:38485800-38493600	Weak transcription	Lung	lung
29	chr19:38485800-38493800	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr19:38485800-38496000	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr19:38486400-38493800	Weak transcription	Fetal Intestine Large	intestine
32	chr19:38488400-38493800	Enhancers	Primary B cells from peripheral blood	blood
33	chr19:38488800-38493600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr19:38489000-38492800	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr19:38489000-38493600	Weak transcription	Brain Angular Gyrus	brain
36	chr19:38489000-38493800	Weak transcription	Brain Anterior Caudate	brain
37	chr19:38489000-38493800	Weak transcription	Colon Smooth Muscle	Colon
38	chr19:38489200-38493800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
39	chr19:38489800-38492200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr19:38490200-38491600	Enhancers	Osteobl	bone
41	chr19:38490200-38492000	Enhancers	Muscle Satellite Cultured Cells	--
42	chr19:38490200-38492000	Enhancers	NH-A	brain
43	chr19:38490200-38493800	Enhancers	Primary hematopoietic stem cells short term culture	blood
44	chr19:38490200-38493800	Enhancers	HUVEC	blood vessel
45	chr19:38490400-38491800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr19:38490400-38493400	Weak transcription	Fetal Muscle Trunk	muscle
47	chr19:38490400-38493400	Weak transcription	Fetal Stomach	stomach
48	chr19:38490400-38493400	Weak transcription	Pancreas	Pancrea
49	chr19:38490400-38493400	Weak transcription	Psoas Muscle	Psoas
50	chr19:38490400-38493800	Enhancers	Primary T helper cells PMA-I stimulated	--

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