Variant report

Variant	rs16979266
Chromosome Location	chr19:45052244-45052245
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11083741	0.81[AFR][1000 genomes]
rs1441618	1.00[CEU][hapmap]
rs16979269	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs73936516	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73936519	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73936803	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062812	chr19:45042262-45214796	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:45051800-45052600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr19:45051800-45052600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr19:45052000-45052400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr19:45052000-45052600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr19:45052000-45052600	Enhancers	HMEC	breast
6	chr19:45052200-45052400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr19:45052200-45052400	Enhancers	A549	lung
8	chr19:45052200-45052600	Enhancers	Gastric	stomach
9	chr19:45052200-45052600	Enhancers	HUVEC	blood vessel
10	chr19:45052200-45052600	Enhancers	NHEK	skin
11	chr19:45052200-45052800	Enhancers	NH-A	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links