Variant report

Variant	rs16979269
Chromosome Location	chr19:45056149-45056150
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11083741	0.81[AFR][1000 genomes]
rs1441617	0.80[AFR][1000 genomes]
rs1441618	1.00[CEU][hapmap]
rs16979266	0.93[AFR][1000 genomes]
rs73936516	0.82[EUR][1000 genomes]
rs73936519	0.82[EUR][1000 genomes]
rs73936803	0.84[AFR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062812	chr19:45042262-45214796	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:45052600-45056800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr19:45055400-45056400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr19:45055400-45056600	Enhancers	K562	blood
4	chr19:45055400-45056600	Enhancers	NHEK	skin
5	chr19:45055400-45057000	Enhancers	HMEC	breast
6	chr19:45055600-45056800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr19:45055600-45058200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr19:45056000-45056800	Weak transcription	A549	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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