Variant report

Variant	rs1698
Chromosome Location	chr19:51517593-51517594
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000269741	TF binding region
ENSG00000268739	TF binding region
KLK9	TF binding region
ENSG00000213022	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1654559	0.83[MEX][hapmap]
rs2075802	0.90[CHB][hapmap];0.93[CHD][hapmap];0.81[JPT][hapmap]
rs2222554	0.92[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap]
rs2569439	0.84[CEU][hapmap]
rs2569441	0.80[CEU][hapmap]
rs2569443	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2569456	0.92[CEU][hapmap];0.95[CHD][hapmap];0.94[GIH][hapmap];0.91[MEX][hapmap];0.87[TSI][hapmap]
rs2659095	0.92[CEU][hapmap];0.95[CHD][hapmap];0.94[GIH][hapmap];0.91[MEX][hapmap];0.87[TSI][hapmap]
rs2659096	0.92[CEU][hapmap];0.95[CHD][hapmap];0.94[GIH][hapmap];0.91[MEX][hapmap];0.89[TSI][hapmap]
rs2691208	0.86[CHD][hapmap];0.81[JPT][hapmap]
rs2691257	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2739429	0.89[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];0.95[TSI][hapmap]
rs6509509	0.95[CHD][hapmap]
rs7259451	0.80[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap]
rs906190	0.83[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv912291	chr19:51505725-51537682	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	esv2286123	chr19:51517592-51517593	Weak transcription Strong transcription Enhancers Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	esv1451996	chr19:51517592-51517593	Weak transcription Strong transcription Genic enhancers Enhancers	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1698	RPS5	cis	parietal	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:51514400-51519000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr19:51514800-51517600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr19:51514800-51520200	Weak transcription	Right Atrium	heart
4	chr19:51517000-51518600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
5	chr19:51517200-51517800	Strong transcription	Esophagus	oesophagus
6	chr19:51517200-51517800	Enhancers	NHEK	skin
7	chr19:51517200-51518200	Genic enhancers	HMEC	breast
8	chr19:51517400-51518800	Strong transcription	Ovary	ovary
9	chr19:51517400-51519600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr19:51517400-51520200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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