Variant report

Variant	rs2691208
Chromosome Location	chr19:51526088-51526089
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1048344	0.88[CEU][hapmap];0.90[TSI][hapmap];0.83[EUR][1000 genomes]
rs1698	0.86[CHD][hapmap];0.81[JPT][hapmap]
rs2569443	0.81[JPT][hapmap]
rs2569456	0.81[CHD][hapmap]
rs2659095	0.81[CHD][hapmap]
rs2659096	0.81[CHD][hapmap]
rs2691209	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2691257	0.86[JPT][hapmap]
rs2739429	0.86[CHD][hapmap];0.81[JPT][hapmap]
rs2739436	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6509509	0.81[CHD][hapmap]
rs7259451	0.94[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv912291	chr19:51505725-51537682	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:51523400-51527400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr19:51523400-51549000	Weak transcription	Right Atrium	heart
3	chr19:51523800-51526200	Weak transcription	Esophagus	oesophagus
4	chr19:51523800-51528600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr19:51524800-51528000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr19:51524800-51528600	Weak transcription	Stomach Mucosa	stomach
7	chr19:51524800-51529400	Weak transcription	HMEC	breast
8	chr19:51525000-51528200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr19:51525000-51528400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr19:51525000-51528400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr19:51525000-51528400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr19:51525000-51528800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr19:51525000-51539800	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr19:51525600-51526200	Active TSS	Spleen	Spleen
15	chr19:51525800-51526400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr19:51525800-51527600	Strong transcription	Gastric	stomach
17	chr19:51526000-51527400	Weak transcription	Pancreas	Pancrea

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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