Variant report

Variant	rs2739436
Chromosome Location	chr19:51526662-51526663
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1048344	0.97[EUR][1000 genomes]
rs2691208	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2691209	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv912291	chr19:51505725-51537682	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:51523400-51527400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr19:51523400-51549000	Weak transcription	Right Atrium	heart
3	chr19:51523800-51528600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr19:51524800-51528000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr19:51524800-51528600	Weak transcription	Stomach Mucosa	stomach
6	chr19:51524800-51529400	Weak transcription	HMEC	breast
7	chr19:51525000-51528200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr19:51525000-51528400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr19:51525000-51528400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr19:51525000-51528400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr19:51525000-51528800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr19:51525000-51539800	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr19:51525800-51527600	Strong transcription	Gastric	stomach
14	chr19:51526000-51527400	Weak transcription	Pancreas	Pancrea
15	chr19:51526200-51527600	Strong transcription	Esophagus	oesophagus
16	chr19:51526400-51527600	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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