Variant report

Variant	rs16983245
Chromosome Location	chr20:21987823-21987824
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs16983322	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16983435	1.00[AMR][1000 genomes]
rs59282496	1.00[AMR][1000 genomes]
rs60582297	1.00[AMR][1000 genomes]
rs6106444	1.00[AMR][1000 genomes]
rs6113469	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6113478	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6113479	1.00[ASW][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.90[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6113516	1.00[AMR][1000 genomes]
rs73899928	1.00[AMR][1000 genomes]
rs8124816	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1058137	chr20:21549350-22295051	Weak transcription Bivalent Enhancer Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:21987400-21989400	Enhancers	Fetal Stomach	stomach
2	chr20:21987600-21988000	Bivalent Enhancer	HepG2	liver
3	chr20:21987600-21988600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr20:21987800-21988400	Enhancers	Fetal Muscle Leg	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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