Variant report

Variant	rs60582297
Chromosome Location	chr20:22040233-22040234
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs16983245	1.00[AMR][1000 genomes]
rs16983322	1.00[AMR][1000 genomes]
rs16983435	1.00[AMR][1000 genomes]
rs59282496	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6106444	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6113469	1.00[AMR][1000 genomes]
rs6113478	1.00[AMR][1000 genomes]
rs6113479	1.00[AMR][1000 genomes]
rs6113516	1.00[AMR][1000 genomes]
rs73899928	1.00[AMR][1000 genomes]
rs8124816	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1058137	chr20:21549350-22295051	Weak transcription Bivalent Enhancer Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv432114	chr20:22012900-22148200	Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22038800-22040400	Enhancers	Colon Smooth Muscle	Colon
2	chr20:22039200-22044000	Enhancers	Primary T cells from cord blood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links