Variant report

Variant	rs16984241
Chromosome Location	chr20:22610942-22610943
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs16984223	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57750989	1.00[AMR][1000 genomes]
rs60123232	1.00[AMR][1000 genomes]
rs6113760	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428690	chr20:22528757-22649625	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1064571	chr20:22601105-22645251	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22603800-22611200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr20:22607400-22611200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr20:22610200-22611600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr20:22610200-22611600	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr20:22610400-22611000	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr20:22610400-22611200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr20:22610400-22611400	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr20:22610400-22611600	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr20:22610400-22611600	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr20:22610800-22611600	Enhancers	HUES64 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links