Variant report

Variant	rs16984223
Chromosome Location	chr20:22603002-22603003
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs16984124	1.00[MEX][hapmap]
rs16984241	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57750989	1.00[AMR][1000 genomes]
rs60123232	1.00[AMR][1000 genomes]
rs6036174	1.00[MEX][hapmap]
rs6113760	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428690	chr20:22528757-22649625	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1064571	chr20:22601105-22645251	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22598200-22603600	Weak transcription	Spleen	Spleen
2	chr20:22601600-22603200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr20:22601600-22607200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr20:22601800-22603600	Weak transcription	Primary hematopoietic stem cells	blood
5	chr20:22601800-22603600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr20:22601800-22603800	Weak transcription	Stomach Mucosa	stomach
7	chr20:22602600-22604000	Weak transcription	Gastric	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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