Variant report

Variant	rs16984304
Chromosome Location	chr20:22648417-22648418
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs16984276	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16984277	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16984278	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16984285	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6048237	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6048246	1.00[ASN][1000 genomes]
rs6113753	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6113754	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6113755	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7362683	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73900526	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428690	chr20:22528757-22649625	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22645600-22664400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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