Variant report

Variant	rs6048246
Chromosome Location	chr20:22656203-22656204
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs16984124	1.00[MEX][hapmap]
rs16984276	0.84[ASN][1000 genomes]
rs16984277	0.84[ASN][1000 genomes]
rs16984278	0.84[ASN][1000 genomes]
rs16984285	0.84[ASN][1000 genomes]
rs16984304	1.00[ASN][1000 genomes]
rs6036174	1.00[MEX][hapmap]
rs6048237	0.84[ASN][1000 genomes]
rs6113753	0.84[ASN][1000 genomes]
rs6113754	0.84[ASN][1000 genomes]
rs6113755	0.84[ASN][1000 genomes]
rs7362683	0.84[ASN][1000 genomes]
rs73900526	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3520132	chr20:22654499-22657229	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22645600-22664400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr20:22652200-22659200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr20:22656000-22657200	Enhancers	Primary B cells from peripheral blood	blood
4	chr20:22656200-22656400	ZNF genes & repeats	iPS DF 6.9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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