Variant report

Variant	rs16984595
Chromosome Location	chrX:104250857-104250858
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1343413	1.00[MEX][hapmap]
rs1419135	1.00[MEX][hapmap]
rs16984615	1.00[YRI][hapmap]
rs16985115	1.00[MEX][hapmap]
rs2227035	0.91[ASW][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];0.94[YRI][hapmap]
rs4354446	1.00[MEX][hapmap]
rs4826909	1.00[MEX][hapmap]
rs5917179	1.00[MEX][hapmap]
rs6621876	1.00[MEX][hapmap]
rs7050119	0.83[LWK][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];0.94[YRI][hapmap]
rs7053750	0.82[LWK][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];0.94[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916408	chrX:103552340-104347979	Bivalent/Poised TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:104250600-104252000	Enhancers	Rectal Mucosa Donor 31	rectum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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