Variant report

Variant	rs16985073
Chromosome Location	chrX:103812810-103812811
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1015505	0.87[ASW][hapmap];1.00[LWK][hapmap]
rs16985070	1.00[ASW][hapmap];1.00[YRI][hapmap]
rs2008182	0.85[ASW][hapmap]
rs5962437	1.00[GIH][hapmap]
rs5962441	1.00[GIH][hapmap]
rs5962956	1.00[GIH][hapmap]
rs5962960	1.00[GIH][hapmap]
rs5962965	1.00[GIH][hapmap]
rs5962969	1.00[GIH][hapmap]
rs6523783	1.00[GIH][hapmap]
rs6652900	1.00[GIH][hapmap]
rs7059845	1.00[GIH][hapmap]
rs7064742	1.00[GIH][hapmap]
rs7879244	1.00[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916408	chrX:103552340-104347979	Bivalent/Poised TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:103809600-103813800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
2	chrX:103809800-103813000	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
3	chrX:103809800-103813800	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
4	chrX:103810000-103813600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
5	chrX:103810000-103813800	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
6	chrX:103810400-103813800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
7	chrX:103810600-103813600	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
8	chrX:103810600-103813600	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
9	chrX:103810600-103813600	Bivalent/Poised TSS	Brain Germinal Matrix	brain
10	chrX:103811000-103813200	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chrX:103811000-103813400	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
12	chrX:103811800-103813400	Bivalent/Poised TSS	Fetal Muscle Leg	muscle
13	chrX:103812400-103813200	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
14	chrX:103812600-103813000	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
15	chrX:103812600-103813200	Bivalent/Poised TSS	Fetal Muscle Trunk	muscle
16	chrX:103812600-103813400	Bivalent/Poised TSS	iPS DF 19.11 Cell Line	embryonic stem cell
17	chrX:103812600-103813400	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chrX:103812600-103813600	Bivalent/Poised TSS	Fetal Brain Female	brain
19	chrX:103812800-103813000	Flanking Bivalent TSS/Enh	Liver	Liver
20	chrX:103812800-103813200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
21	chrX:103812800-103813400	Bivalent/Poised TSS	NHEK	skin

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