Variant report

Variant	rs5962969
Chromosome Location	chrX:103904121-103904122
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1419137	1.00[MEX][hapmap]
rs1578841	1.00[MEX][hapmap]
rs16985073	1.00[GIH][hapmap]
rs16985097	1.00[YRI][hapmap]
rs16985115	1.00[GIH][hapmap]
rs2051097	1.00[MEX][hapmap]
rs2145183	1.00[MEX][hapmap]
rs41529555	1.00[MEX][hapmap]
rs5962437	0.92[ASW][hapmap];1.00[GIH][hapmap]
rs5962441	1.00[ASW][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[YRI][hapmap]
rs5962956	0.92[ASW][hapmap];1.00[GIH][hapmap]
rs5962960	0.92[ASW][hapmap];1.00[GIH][hapmap]
rs5962965	0.92[ASW][hapmap];1.00[GIH][hapmap];0.80[YRI][hapmap]
rs6523783	0.92[ASW][hapmap];1.00[GIH][hapmap]
rs6652900	0.92[ASW][hapmap];1.00[GIH][hapmap]
rs7059845	0.92[ASW][hapmap];1.00[GIH][hapmap]
rs7064742	0.92[ASW][hapmap];1.00[GIH][hapmap]
rs7879244	1.00[ASW][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916408	chrX:103552340-104347979	Bivalent/Poised TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:103903400-103904200	Enhancers	Small Intestine	intestine
2	chrX:103903400-103904400	Enhancers	Liver	Liver
3	chrX:103903400-103905000	Enhancers	Fetal Heart	heart
4	chrX:103903600-103905000	Enhancers	NHEK	skin
5	chrX:103903800-103904800	Enhancers	Breast Myoepithelial Primary Cells	Breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links