Variant report

Variant	rs2145183
Chromosome Location	chrX:103961049-103961050
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1343413	0.92[LWK][hapmap];1.00[MKK][hapmap];0.94[YRI][hapmap]
rs1419135	0.92[LWK][hapmap];1.00[MKK][hapmap];0.94[YRI][hapmap]
rs1419137	0.92[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.94[YRI][hapmap]
rs1578841	1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.94[YRI][hapmap]
rs16985075	1.00[ASW][hapmap]
rs16985099	0.85[ASW][hapmap]
rs16985115	0.84[LWK][hapmap];0.95[MKK][hapmap];0.94[YRI][hapmap]
rs17003888	0.94[YRI][hapmap]
rs2051097	1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.94[YRI][hapmap]
rs2145184	0.93[YRI][hapmap]
rs41529555	1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.94[YRI][hapmap]
rs5917175	0.92[LWK][hapmap];0.95[MKK][hapmap];0.94[YRI][hapmap]
rs5962441	1.00[MEX][hapmap]
rs5962969	1.00[MEX][hapmap]
rs7879244	1.00[MEX][hapmap]
rs7889721	0.94[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916408	chrX:103552340-104347979	Bivalent/Poised TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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